Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2864 ATGAAACCCGAGTTATACGAAATCTCAGACGACGAATGGGAAAATCACTCTTTCAAACCCTCACGAGTTCTCAAACGACCTCGCTCTCCACCGCCGCCTCTCGACTCCTTCGCTTATAAACCTCTTTCGGAACCCCAACCCGAACCCGTTGCTTCCTCCGACGACGATTGCGTCGAAATCAATCACATAGCCGATAATAACAACAACACCACCACCAACAACAACAACTTTGAATGTCTCGATGATTTAGAGGATGCTGATGTGGATGATGTTGAAGCGGCTCCAACGGCGAGACCTGGAAGGAGGTTTATAATCGATGATGAGGATGAGGAGGATGCCGGAGGCGTCGGTGATAATGTTGATGTTGAAGTGTTTGATATTGATTCAACGGAAGATGAAGTGGAGGATGCGATTGATGAAGGGAATGAAGATGATTTGGTTGGTAAGGCTTTGCAAAAGTGTGCGAGGATTTCTGTGGAGTTGAAGGGAGAGTTGTTTGGGTCTTCTGGAGTTGCTTGTGAGAGATATTCTGAGGTGGAATCTTCTTCAGTTAGAATCGTTACTCAGGATGATGTTGATGTTGCATGTGGTTCCGAGGATTCGGATTTTCAACCTCTGTTAAAGCCGTATCAACTTGTTGGTGTTAATTTCTTACTTCTGTTGTATCGGAAGAGAATTGGAGGAGCTATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGGAATCACATATTTGAATTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAATGGTGTCCATCCTTTTCTGTTCTTCAATATCATGGAGCTACACGCACAGCATACTGCAAGGAGTTGAACTCTTTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAACGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAGTGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCTATGTTAGAGTTTATGATGCCTGATATTTTTGCTTCTGAGGATGTTGATTTAAAAAAGTTACTAAGTGCAGAAGATAGAGATTTAGTTAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAACAACTTGTTCAAAAAACACAGCAGGTTCAATATGTCATAATGGAAAAGCAACAGGAACATGCATACAGGGAAGCCATTGAAGAGTATCGCGCTTTTTCAAAAGCTCGGCTAACAAAATGTTCTGATTTGAACTCAAAAAGTATTCTTGAAGCTCTTCCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGGAAGATAGCAAACCACCCCTTGTTGATACGGAGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTGCATCCTATAGGTGCTTTTGGCTTTGAATGTACCATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGATTTCTCCATTCACCGGCTTTTACTTCATTATAGTATCAATGATAGAAAGGGGATCCTTTCAGATAAGTATGTTATGCTTTCTACAAAATGTCGGGCTTTAGCAGAGCTTCTTCCATCACTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGACTTGATGGAAGCACACAGGTAGCAGAGAGACAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCCGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCCGAAGACCGTTGTCATCGAATTGGACAAACAAAGCCTGTAACCATTTATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGACCACAGAAGAGATCAAAGAAGGGGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTAAAATATTGA 2274 0.4147 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLDSFAYKPLSEPQPEPVASSDDDCVEINHIADNNNNTTTNNNNFECLDDLEDADVDDVEAAPTARPGRRFIIDDEDEEDAGGVGDNVDVEVFDIDSTEDEVEDAIDEGNEDDLVGKALQKCARISVELKGELFGSSGVACERYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQGITYLNLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGATRTAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARSANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDRDLVSRMKSILGPFILRRLKSDVMQQLVQKTQQVQYVIMEKQQEHAYREAIEEYRAFSKARLTKCSDLNSKSILEALPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTMDRVIEELKSYNDFSIHRLLLHYSINDRKGILSDKYVMLSTKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLETTEEIKEGDMPEKTMGEILSAILLKY* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2864 757 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 78 754 - -
Tpr1g2864 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 736 IPR027417 -
Tpr1g2864 757 Pfam SNF2-related domain 225 513 IPR000330 GO:0005524|GO:0140658
Tpr1g2864 757 PANTHER SNF2/RAD54 HELICASE FAMILY 78 754 - -
Tpr1g2864 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 433 IPR027417 -
Tpr1g2864 757 CDD DEXHc_Snf 207 400 - -
Tpr1g2864 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 586 736 IPR001650 -
Tpr1g2864 757 SMART helicmild6 612 695 IPR001650 -
Tpr1g2864 757 CDD SF2_C_SNF 573 706 - -
Tpr1g2864 757 SMART ultradead3 203 408 IPR014001 -
Tpr1g2864 757 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g2864 757 Gene3D - 565 752 IPR027417 -
Tpr1g2864 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 398 IPR014001 -
Tpr1g2864 757 MobiDBLite consensus disorder prediction 1 54 - -
Tpr1g2864 757 Pfam Helicase conserved C-terminal domain 583 695 IPR001650 -
Tpr1g2864 757 Gene3D - 189 458 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2864 Tpr-Chr1 32997899 33007597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2864 228 746 RAD5 or RAD16-like Gene Family AT5G22750 27.014 4.88e-46 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g2864 SNF2_N 1.6e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2864 K14439 - gmx:100806323 1210.28