Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2863 ATGGATCCTCAAAACCCAAACCAAAACCCATCTTTTCCTTCAGCACCACCTGGTATACCTATCCCAGCTCCAATCCTAACTCCGAAGCAAGAGCCTCTTGACGAACCACTTCAACCGAACCTAAACAATCTTCCAAACCTCAATCTTAACCTCAATTTAAACCACAATAACATTTCTCAAGAACAAACCCTAACCCACTCCGATGATTTTGGACGTGTGGCTGAGCTTTTCCGAACCAATTTCAGCAATGGACTTCAACAAATTCAAAACGACGTCGTCGATGATCCTAATTCACGCGCCATCGTTCCTGTTCCAGACGCGCCGAGAAATGAGGAGAATAATAATAACGCTCCGGCGGGTGAAGTTGCGGCGGCGCAGAGGCTTCAACGGAGATATAAAGAGCTTGTTCGTGTTTCAGATCTTGGTTTACCGGATCAACGACAGTTTCGTGAGATGGTTAGGAGAACGAGAATGGTTTATGATTCTATTCGAGTTTTGGCTGTGGTTGAAGAAGAGAAGAGAGTTGATGTTCGGAGGGCGAGAAGCGATTTGAGAGCTTCGGCGGTAATGAGAAATCATGGTTTGTGGCTGAATCGTGATAAGAGAATCGTTGGGGCGATTCCTGGTATTTGTATTGGTGATGTTTTTATTTATAGAATGGAATTAGTTGTGGTTGGTTTACACGGTCAACCACAAGCTGGGATTGATTATTTACCCGGTAGTATGAGTTCGAATGGAGAACCAATTGCTACTAGTGTGATTGTTTCCGGTGGTTATGAGGATGATGTTGATCAAGGTGATGTTATTATTTATTCTGGTCATGGTGGTCAGGATAAGAATTCAAGGCAAGTTTTTCATCAGAAGTTGGAAGGTGGGAACCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTGGTGTTCGGTGTGAAGGTAGTTCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGATTATATAGGATTGTTGAATGTTGGTTTGATGTTGGTAAATCGGGTTTTGGTGTATATAAGTATAAGTTATGGAGGATTGAGGGTCAAGCCAAAATGGGTAGTTCGGTTTTGAAGGAGGCTCTTATGCTTAGGAGAGATCCTTTATGTTTTAAACCCATGTGTGTATTATCGCTTGATATTGCCAACGGGAAGGAGAGTGTTGGTATTAGGCTATTTAATGATATTGATAGGAATCATGATCCAATGTGTTTTGAGTATCTTCCGAAGGCTACTTTTCCACCGTTTGTGTTTCATCAGAGTGGGAAGACGACAGGCTGTGCATGTGTGGATGGTTGTACGGAGGAATGTTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATATAGTCAAAACGGGCTTCTGTTGAAAGGGAGGCCATTACTTTTTGAATGTGGTCCTTTTTGCCATTGTCCGCCTCATTGTCGTAACCGTGTAACGCAAAAAGGTCTTAAACACAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCTTTAGACCTTATTCAAGCTGGCGCATTCATATGTGAATACACCGGGGTTGTTTTGACTAAGGAGCAAGCACAAATTTTTACCATGAATGGTGATTCATTGATATATCCGAGTCGGTTTGCGGAAAGTTGGGCGGAATGGGGTAATTTATCCTTGATAGACGCTAATTATAAACGCCCGTCGTATCCATCGATTCCTCCTTTAGACTTTGCTATGGATGTATCTAGAATGAGGAATGTTGCTTGCTATATCAGTCATAGCTCAACTCCCAATGTGATGGTTCAATTTGTGCTTTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGACTATGGGGTAGCCGGGGTAGCTGATGAGGAATTGACTGGCAAGCTCGCTATATGCATGTAA 1965 0.4234 MDPQNPNQNPSFPSAPPGIPIPAPILTPKQEPLDEPLQPNLNNLPNLNLNLNLNHNNISQEQTLTHSDDFGRVAELFRTNFSNGLQQIQNDVVDDPNSRAIVPVPDAPRNEENNNNAPAGEVAAAQRLQRRYKELVRVSDLGLPDQRQFREMVRRTRMVYDSIRVLAVVEEEKRVDVRRARSDLRASAVMRNHGLWLNRDKRIVGAIPGICIGDVFIYRMELVVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGSSSASGKVYVYDGLYRIVECWFDVGKSGFGVYKYKLWRIEGQAKMGSSVLKEALMLRRDPLCFKPMCVLSLDIANGKESVGIRLFNDIDRNHDPMCFEYLPKATFPPFVFHQSGKTTGCACVDGCTEECFCFMKNGNEFPYSQNGLLLKGRPLLFECGPFCHCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTKEQAQIFTMNGDSLIYPSRFAESWAEWGNLSLIDANYKRPSYPSIPPLDFAMDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLREFSLDYGVAGVADEELTGKLAICM* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2863 654 ProSiteProfiles SET domain profile. 494 637 IPR001214 GO:0005515
Tpr1g2863 654 Pfam Pre-SET motif 389 486 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g2863 654 Gene3D SET domain 363 643 IPR046341 -
Tpr1g2863 654 Coils Coil 650 654 - -
Tpr1g2863 654 SUPERFAMILY PUA domain-like 186 367 IPR015947 -
Tpr1g2863 654 SMART preset_2 386 478 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g2863 654 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 647 - -
Tpr1g2863 654 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g2863 654 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 68 653 IPR025794 GO:0016571
Tpr1g2863 654 MobiDBLite consensus disorder prediction 9 29 - -
Tpr1g2863 654 ProSiteProfiles YDG domain profile. 205 354 IPR003105 -
Tpr1g2863 654 Pfam SAD/SRA domain 204 358 IPR003105 -
Tpr1g2863 654 ProSiteProfiles Pre-SET domain profile. 433 491 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g2863 654 Pfam SET domain 505 637 IPR001214 GO:0005515
Tpr1g2863 654 SUPERFAMILY SET domain 378 638 IPR046341 -
Tpr1g2863 654 Gene3D - 202 362 IPR036987 -
Tpr1g2863 654 SMART set_7 494 643 IPR001214 GO:0005515
Tpr1g2863 654 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 24 647 - -
Tpr1g2863 654 SMART G9a_1 200 358 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2863 Tpr-Chr1 32986910 32992328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2863 150 639 Su(var)3-9 homologs AT5G04940 38.153 1.38e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g2863 SAD_SRA 2.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2863 K11420 - gmx:100795514 934.48