Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2862 ATGTCCATGACTTGCAACCCAAGAAATAATGATACTCACCCCTCTAGTATCATTCGTTTCTTTAAGATTGTTACCCCAACAAATCTTCAAGATGGAAACATTAGAATTCCAAACGCTTTCACTAAGATACATAGTGGTAATATTTCAAACCCAATGTTTCTCAACACTCCAGATGACAAAAAATGGGAAATACATTTGACTAAAGAGGATGATAATATTTGGATTCAAAAAGGTTTTAAGGAATTTGCTACACATTATTCATTAGATTATGGACACATGGTGATGTTTCAATATGAGAAAAATTCTCATTTTAATGTTCACATATTTGACAAGACTACTCTTGAAATTGAATATCATGCTTATGGTGGAAATCAACAACATCATGAACAGAATAGCCCAATTGAAAATTTTGATGAGCAACTTCCATGCAAGAAGGCTAGACAAAAATCACAAATTTGGAGTCCTCAACCATATAAGAAATTGAGATTTGACACAAGTGAAGATGCTGGAACAAGTTCCAAAGTGCATAACTTGCCTAAACTTGTCCAAGTTAAAGAGGAGAATGATGATACCGCTGTATTCCGAAATATGAAGCATGATCAAGAGCACAAGAATTTAACTTCTAAAATAGAAGAAGCTTTAAACAAAGCGAAAAACTACAAATCTAACAATCCATTTTTCACAGTTGTCATGACATATTCTTATGTTAATCAATACATGTACGTCCCTTTAGATTTTGATCAAAAGAATTTGAAGGAAGAGCAAAGCGAAATCGTACTTCGAGTCTTGGATGATGAGAGAACTTGGATTGTTAAATATTGTCAGAGAAGAATTAGTACTGGATGGAAAACATTTGCATCTGATAATAATTTGAAAGTGGGAGATGTTTGTCTTTTTGAGATGATCAATAGCAAAGCCTATGCTTTTAAAGTACTAATTTTTCGACTTGACGAAGAACAACATTCCTCTCCACCACAAGTTCATGGAGATGAAGTTAATTGGTTAGAAACCGCAGGAATCACAGAAGTTGAAAGTAAAACTATTATGTCAAATAAAGGAAGCATGGCAACTCAAAGAAATTCACTGCAGGCTAGTCCAATGTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCTAATCAATTCACATCCACTTTGGAAAATCCACATTTCACCATCAAATTGAAATCTAATCATTGGGATGTTTACAAACCGCGTATACAAATGTCGTTCGCAAGGAAGTACTTGTGTCTTAAAGGGAAGAGTATAAAGTTGCGGTTCGATGAAGAATTGTGGACTGTAAACTTGGCATGTTATCCCTCTGAACCATCAATCAAGTTGAGTGATGGTTGGAGCCAGTTTGTAGACGAAAATAAATTGCAGGCTGGAGATGTATGTGTTTTTGAGCTTGTCAACGAGGAAGATGTTGTGTTTGATGTTCATATTTTCAGAGGCTGCAATTAG 1461 0.3484 MSMTCNPRNNDTHPSSIIRFFKIVTPTNLQDGNIRIPNAFTKIHSGNISNPMFLNTPDDKKWEIHLTKEDDNIWIQKGFKEFATHYSLDYGHMVMFQYEKNSHFNVHIFDKTTLEIEYHAYGGNQQHHEQNSPIENFDEQLPCKKARQKSQIWSPQPYKKLRFDTSEDAGTSSKVHNLPKLVQVKEENDDTAVFRNMKHDQEHKNLTSKIEEALNKAKNYKSNNPFFTVVMTYSYVNQYMYVPLDFDQKNLKEEQSEIVLRVLDDERTWIVKYCQRRISTGWKTFASDNNLKVGDVCLFEMINSKAYAFKVLIFRLDEEQHSSPPQVHGDEVNWLETAGITEVESKTIMSNKGSMATQRNSLQASPMSFKNSEAKKEANQFTSTLENPHFTIKLKSNHWDVYKPRIQMSFARKYLCLKGKSIKLRFDEELWTVNLACYPSEPSIKLSDGWSQFVDENKLQAGDVCVFELVNEEDVVFDVHIFRGCN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2862 486 ProSiteProfiles B3 DNA-binding domain profile. 431 485 IPR003340 GO:0003677
Tpr1g2862 486 ProSiteProfiles B3 DNA-binding domain profile. 225 317 IPR003340 GO:0003677
Tpr1g2862 486 Pfam B3 DNA binding domain 405 483 IPR003340 GO:0003677
Tpr1g2862 486 Pfam B3 DNA binding domain 227 315 IPR003340 GO:0003677
Tpr1g2862 486 Pfam B3 DNA binding domain 20 111 IPR003340 GO:0003677
Tpr1g2862 486 CDD B3_DNA 388 483 IPR003340 GO:0003677
Tpr1g2862 486 SUPERFAMILY DNA-binding pseudobarrel domain 15 111 IPR015300 -
Tpr1g2862 486 Gene3D - 368 485 IPR015300 -
Tpr1g2862 486 Gene3D - 206 318 IPR015300 -
Tpr1g2862 486 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Tpr1g2862 486 SMART B3_2 20 112 IPR003340 GO:0003677
Tpr1g2862 486 SMART B3_2 227 317 IPR003340 GO:0003677
Tpr1g2862 486 SMART B3_2 391 485 IPR003340 GO:0003677
Tpr1g2862 486 SUPERFAMILY DNA-binding pseudobarrel domain 385 483 IPR015300 -
Tpr1g2862 486 CDD B3_DNA 225 315 IPR003340 GO:0003677
Tpr1g2862 486 SUPERFAMILY DNA-binding pseudobarrel domain 220 317 IPR015300 -
Tpr1g2862 486 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 316 - -
Tpr1g2862 486 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 356 483 - -
Tpr1g2862 486 CDD B3_DNA 19 110 IPR003340 GO:0003677
Tpr1g2862 486 PANTHER B3 DOMAIN-CONTAINING 13 316 - -
Tpr1g2862 486 PANTHER B3 DOMAIN-CONTAINING 356 483 - -
Tpr1g2862 486 Gene3D - 15 113 IPR015300 -
Tpr1g2862 486 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2862 Tpr-Chr1 32980253 32984715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2862 371 483 B3 DNA Binding Superfamily AT3G18990 35.593 4.13e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2862 B3 2.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2862 - - mtr:MTR_8g103940 664.84