Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2861 ATGGCCTCTCAAGAACTTAATCATGAGACTAATATTGGTGTCCACTTTATCAAGATTATTCTTCAAACTTCCCTTCAACAAGGAAAACTGAGAGTGCCTATAAGTTTTGTGAGGAGGCATTGGAAAGGAATAACAAACCCAGTTACTCTAAGGCTTCCAAATTCGACCGAAAAGAAAGTTTCTTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAGAGAATTTGCAAATTACTTGTCTTTGAGTGATTTACAAATTTTGGTGTTTCAATATCAAGGAAATTCGCTCTTTAGTGTGATTGGATTTGGAAAATGCGGATTAGAAATAAAATACCCTTTAAACGAAACTAGTGAAAAAGCTGAAGAAGTCGAAGAAAGTGATTGTTCTTTGAAAATTATTGAAGAGACGCCATTATTGCGGGGTAAAAGGTCAAAATCATCATCGCGATCTTCTAAAATTCGTAAGAAGATTAAAATCATCCCAAATGAACAAAAAGAATATAAGTATGAGAAGAGAAAAGTCCAAGAACATCCAAGATTTCCTAATTTTAAGGATATGGACATTGGAAGTAGTAGTGATGATCTTAAGGAGAGAAGCAGAGATTTGCACGAAAAAGTGAAGAAAAAATTCAAATCTGATAAGGACTTCTTCACATCTATGATTCACAAGACATACATTGAGAGAGATATCTTGGGCATACCAATTGAGTTTGCTAAGACACATCTGTACAGGATGGAAGGAAGAAATGCTATACTTTTTGTTGATCAAGAAAGAACATGGAATGTTGATTTGAAGATTGGTGCAAATAATCAATATAAACTTGTGGATGGTTGGAGTAAATTTTGTGCTGACAATAATTTGAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACTATTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAAGACTCCATATTTTCAAGGAAATTCCAGTAAACTATATTAG 1005 0.3353 MASQELNHETNIGVHFIKIILQTSLQQGKLRVPISFVRRHWKGITNPVTLRLPNSTEKKVSWEKTSDYDVWFCNGWREFANYLSLSDLQILVFQYQGNSLFSVIGFGKCGLEIKYPLNETSEKAEEVEESDCSLKIIEETPLLRGKRSKSSSRSSKIRKKIKIIPNEQKEYKYEKRKVQEHPRFPNFKDMDIGSSSDDLKERSRDLHEKVKKKFKSDKDFFTSMIHKTYIERDILGIPIEFAKTHLYRMEGRNAILFVDQERTWNVDLKIGANNQYKLVDGWSKFCADNNLKLGDVCVFILNKCKGTISFQVVIFSLEKDMKTPYFQGNSSKLY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2861 334 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
Tpr1g2861 334 CDD B3_DNA 235 316 IPR003340 GO:0003677
Tpr1g2861 334 Gene3D - 10 109 IPR015300 -
Tpr1g2861 334 ProSiteProfiles B3 DNA-binding domain profile. 220 318 IPR003340 GO:0003677
Tpr1g2861 334 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 316 - -
Tpr1g2861 334 SUPERFAMILY DNA-binding pseudobarrel domain 215 316 IPR015300 -
Tpr1g2861 334 PANTHER B3 DOMAIN-CONTAINING 12 316 - -
Tpr1g2861 334 CDD B3_DNA 15 106 IPR003340 GO:0003677
Tpr1g2861 334 Pfam B3 DNA binding domain 220 311 IPR003340 GO:0003677
Tpr1g2861 334 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Tpr1g2861 334 SMART B3_2 16 109 IPR003340 GO:0003677
Tpr1g2861 334 SMART B3_2 220 318 IPR003340 GO:0003677
Tpr1g2861 334 Gene3D - 199 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2861 Tpr-Chr1 32975731 32977854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2861 16 305 B3 DNA Binding Superfamily AT3G18990 25.904 6.08e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2861 B3 4.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2861 - - mtr:MTR_4g119990 432.565