Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2860 ATGTCTATTGATGAGTTGCATAAGTCACAATGTTTTTTCAAGGTCATTCTCGATACAACCCTTGAAAACAAAGAACTTATGATTCCTAGGAGTTTTGTGAAGAAATATGGAAAAGAATTATCAAATCCAGTAACCCTCATGCTACCAAATGGTGATAAATGGAAAATAAATTGGATAAAACGTGATGATCATGATGTGTGGTTTCAAAATGGTTGGGAAAAATTTGCACAACACTATTCTATGAGCTTTGGCCATTTTCTAGTTTTTAAATTTGAAAAAGAGTCACAATTTCAAGTTATGATATTTGATAAGAGTGCTTTAGAAATAGACTATTTGAGTAAAGGATTAAGCTCTAGAGATAATGATGATGATCAAAGGAATAATCAACATCATGATGAAGATGCTGAAAAGAAAGATAATGATAATAATAATAATTATATTGAAATTTCTGATGATGAGAATGAAATGCTAAGATCTTCATCACCTCAACCTCACAAAAGAATGAAAATCAATGATGGTTCATCTCAAAGGAAAGAGCTAAAGAAGGAAAAAATCAATTTAGTCCAAGAAGTCAAAGCTAAGAATAGGTCAACAAATAATGAAGCTATGACAAGGAATGAAGCACTAAAAGACACAACAAGGAGAGCCATGGATTTACATTTTGATAATCCCTCTTTCATTCGTCCATTGCATCAATCCTACCTCCAAAATTTGTTTATACCAACATGGTTTTCTAAACAATATTTGAATGGCAAGAAAGGGATTGCAACCATAGTGATTGGTGAAGAGGATAAGACTTGGGACTTGAAGTTCAAGTTCAATGATGTCTCTAATAGGACCATGCTACATGGTGGATGGGGTTCAATTGTTGAGGAATATGATTTAAAAGTAGGGGATATTTGTGTCTTTGAGTTGATTGATGGCAAAAGTATTTCATTTAAAGTTCATATAGTCCGAGCCAATGCATGA 969 0.3282 MSIDELHKSQCFFKVILDTTLENKELMIPRSFVKKYGKELSNPVTLMLPNGDKWKINWIKRDDHDVWFQNGWEKFAQHYSMSFGHFLVFKFEKESQFQVMIFDKSALEIDYLSKGLSSRDNDDDQRNNQHHDEDAEKKDNDNNNNYIEISDDENEMLRSSSPQPHKRMKINDGSSQRKELKKEKINLVQEVKAKNRSTNNEAMTRNEALKDTTRRAMDLHFDNPSFIRPLHQSYLQNLFIPTWFSKQYLNGKKGIATIVIGEEDKTWDLKFKFNDVSNRTMLHGGWGSIVEEYDLKVGDICVFELIDGKSISFKVHIVRANA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2860 322 PANTHER B3 DOMAIN-CONTAINING 7 320 - -
Tpr1g2860 322 Pfam B3 DNA binding domain 230 320 IPR003340 GO:0003677
Tpr1g2860 322 Pfam B3 DNA binding domain 13 104 IPR003340 GO:0003677
Tpr1g2860 322 SUPERFAMILY DNA-binding pseudobarrel domain 222 319 IPR015300 -
Tpr1g2860 322 MobiDBLite consensus disorder prediction 117 183 - -
Tpr1g2860 322 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 320 - -
Tpr1g2860 322 ProSiteProfiles B3 DNA-binding domain profile. 223 321 IPR003340 GO:0003677
Tpr1g2860 322 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
Tpr1g2860 322 SMART B3_2 12 105 IPR003340 GO:0003677
Tpr1g2860 322 SMART B3_2 226 321 IPR003340 GO:0003677
Tpr1g2860 322 Gene3D - 203 322 IPR015300 -
Tpr1g2860 322 CDD B3_DNA 11 103 IPR003340 GO:0003677
Tpr1g2860 322 Gene3D - 4 106 IPR015300 -
Tpr1g2860 322 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Tpr1g2860 322 MobiDBLite consensus disorder prediction 117 162 - -
Tpr1g2860 322 Coils Coil 177 197 - -
Tpr1g2860 322 CDD B3_DNA 224 319 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2860 Tpr-Chr1 32966561 32968416 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2860 12 321 B3 DNA Binding Superfamily AT3G18990 29.499 2.25e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2860 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2860 - - mtr:MTR_5g044670 379.793