Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2859 ATGTCCATTCACCATGGGCGTGGCAGTGAAGCTAAGGGAATGCACTTCTATCAGACTATTCAACTTCGTCAGTTGCAAGACCAACAACTTATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTATGTGTAAAATGTTTTGGGTGCAATTGGGTGATGATATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCATATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGATGATGATGATGATGATGGCTATGCTGAGATTACAAATGATTGTGACAATACCAAACAATCTCTCAAGAAAAAGAAAATCAACTCAAACGATAGTGCTACTACTTTTGCTACACCACAAGTGAAAAAGATTCACAAGAGAAAAATTAACATGAAGGCAACCCAGCAAAAAATCTCAGAGGCTAATGGAAAGATAGGAGGCAGCGGTAAGAAAGCTACGAAATCCTCAAAAACTGTAGATGCAAATAAGAGAAGGTGCACCAATTCTCATCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTGTGTGGAAGGTCATAAATTAAGATTGACGATACCTAGTTGGTTTTCGAAAGAGTACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGAAGTGTTAGTGATGAAAAGACATGGCACGTGACATTAAGCTTTGATGAACGCAATAGAAATTTTAAAATGGGTGGTGGTTGGAGATCATTTTCGCGAGAACATAACTTGCAAGTCGGTGATGAATGTAAATTTGAGATGACTGAACGAGAACCTCTATCATTCGCAATTACTATTGTTCAAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCGGTAGTAGATATGGATAATGTGGGCAATTTTGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAATAATTATGAAAGTCCGAATTTACATAATAAATTCAAGGTCTCTGTAACAACATTAGACAAGCTGATCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATGAAGATCTTGATTATGGGGGCTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGATGATTGATTTACAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1425 0.3698 MSIHHGRGSEAKGMHFYQTIQLRQLQDQQLMVPRNFVERYWKDVSNPISLRLPNESMCKMFWVQLGDDIWLQDWKRFARSLRCGDLLVFQYKGGSYFHVIIFDDSKLEIDYSSMICNDEQEDKESDDDDDDDDGYAEITNDCDNTKQSLKKKKINSNDSATTFATPQVKKIHKRKINMKATQQKISEANGKIGGSGKKATKSSKTVDANKRRCTNSHHPDENPNFTLKLSRSCVEGHKLRLTIPSWFSKEYMNELLQGNATIRSVSDEKTWHVTLSFDERNRNFKMGGGWRSFSREHNLQVGDECKFEMTEREPLSFAITIVQATKEPCPEQFQENQRVKEKSETSPVVDMDNVGNFGEGISRSCPKTHGINNYESPNLHNKFKVSVTTLDKLIIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNEDLDYGGFTKGWKEFVRECKVKIGDTCFFEMIDLQNHVFKVSIILDV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2859 474 MobiDBLite consensus disorder prediction 203 218 - -
Tpr1g2859 474 SMART B3_2 225 325 IPR003340 GO:0003677
Tpr1g2859 474 SMART B3_2 383 469 IPR003340 GO:0003677
Tpr1g2859 474 SMART B3_2 16 105 IPR003340 GO:0003677
Tpr1g2859 474 CDD B3_DNA 223 321 IPR003340 GO:0003677
Tpr1g2859 474 MobiDBLite consensus disorder prediction 189 219 - -
Tpr1g2859 474 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 326 471 - -
Tpr1g2859 474 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 323 - -
Tpr1g2859 474 ProSiteProfiles B3 DNA-binding domain profile. 226 325 IPR003340 GO:0003677
Tpr1g2859 474 SUPERFAMILY DNA-binding pseudobarrel domain 13 104 IPR015300 -
Tpr1g2859 474 PANTHER B3 DOMAIN-CONTAINING 8 323 - -
Tpr1g2859 474 PANTHER B3 DOMAIN-CONTAINING 326 471 - -
Tpr1g2859 474 ProSiteProfiles B3 DNA-binding domain profile. 378 474 IPR003340 GO:0003677
Tpr1g2859 474 CDD B3_DNA 386 471 IPR003340 GO:0003677
Tpr1g2859 474 Gene3D - 201 326 IPR015300 -
Tpr1g2859 474 Gene3D - 371 473 IPR015300 -
Tpr1g2859 474 Gene3D - 8 106 IPR015300 -
Tpr1g2859 474 SUPERFAMILY DNA-binding pseudobarrel domain 220 319 IPR015300 -
Tpr1g2859 474 Pfam B3 DNA binding domain 238 321 IPR003340 GO:0003677
Tpr1g2859 474 Pfam B3 DNA binding domain 384 464 IPR003340 GO:0003677
Tpr1g2859 474 SUPERFAMILY DNA-binding pseudobarrel domain 384 469 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2859 Tpr-Chr1 32951278 32962460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2859 16 320 B3 DNA Binding Superfamily AT3G18990 26.608 1.34e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2859 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2859 - - mtr:MTR_6g061070 628.632