LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g2859	ATGTCCATTCACCATGGGCGTGGCAGTGAAGCTAAGGGAATGCACTTCTATCAGACTATTCAACTTCGTCAGTTGCAAGACCAACAACTTATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTATGTGTAAAATGTTTTGGGTGCAATTGGGTGATGATATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCATATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGATGATGATGATGATGATGGCTATGCTGAGATTACAAATGATTGTGACAATACCAAACAATCTCTCAAGAAAAAGAAAATCAACTCAAACGATAGTGCTACTACTTTTGCTACACCACAAGTGAAAAAGATTCACAAGAGAAAAATTAACATGAAGGCAACCCAGCAAAAAATCTCAGAGGCTAATGGAAAGATAGGAGGCAGCGGTAAGAAAGCTACGAAATCCTCAAAAACTGTAGATGCAAATAAGAGAAGGTGCACCAATTCTCATCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTGTGTGGAAGGTCATAAATTAAGATTGACGATACCTAGTTGGTTTTCGAAAGAGTACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGAAGTGTTAGTGATGAAAAGACATGGCACGTGACATTAAGCTTTGATGAACGCAATAGAAATTTTAAAATGGGTGGTGGTTGGAGATCATTTTCGCGAGAACATAACTTGCAAGTCGGTGATGAATGTAAATTTGAGATGACTGAACGAGAACCTCTATCATTCGCAATTACTATTGTTCAAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCGGTAGTAGATATGGATAATGTGGGCAATTTTGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAATAATTATGAAAGTCCGAATTTACATAATAAATTCAAGGTCTCTGTAACAACATTAGACAAGCTGATCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATGAAGATCTTGATTATGGGGGCTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGATGATTGATTTACAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG	1425	0.3698	MSIHHGRGSEAKGMHFYQTIQLRQLQDQQLMVPRNFVERYWKDVSNPISLRLPNESMCKMFWVQLGDDIWLQDWKRFARSLRCGDLLVFQYKGGSYFHVIIFDDSKLEIDYSSMICNDEQEDKESDDDDDDDDGYAEITNDCDNTKQSLKKKKINSNDSATTFATPQVKKIHKRKINMKATQQKISEANGKIGGSGKKATKSSKTVDANKRRCTNSHHPDENPNFTLKLSRSCVEGHKLRLTIPSWFSKEYMNELLQGNATIRSVSDEKTWHVTLSFDERNRNFKMGGGWRSFSREHNLQVGDECKFEMTEREPLSFAITIVQATKEPCPEQFQENQRVKEKSETSPVVDMDNVGNFGEGISRSCPKTHGINNYESPNLHNKFKVSVTTLDKLIIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNEDLDYGGFTKGWKEFVRECKVKIGDTCFFEMIDLQNHVFKVSIILDV*	475

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr1g2859	474	MobiDBLite	consensus disorder prediction	203	218	-	-
Tpr1g2859	474	SMART	B3_2	225	325	IPR003340	GO:0003677
Tpr1g2859	474	SMART	B3_2	383	469	IPR003340	GO:0003677
Tpr1g2859	474	SMART	B3_2	16	105	IPR003340	GO:0003677
Tpr1g2859	474	CDD	B3_DNA	223	321	IPR003340	GO:0003677
Tpr1g2859	474	MobiDBLite	consensus disorder prediction	189	219	-	-
Tpr1g2859	474	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	326	471	-	-
Tpr1g2859	474	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	8	323	-	-
Tpr1g2859	474	ProSiteProfiles	B3 DNA-binding domain profile.	226	325	IPR003340	GO:0003677
Tpr1g2859	474	SUPERFAMILY	DNA-binding pseudobarrel domain	13	104	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g2859	Tpr-Chr1	32951278	32962460	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g2859	16	320	B3 DNA Binding Superfamily	AT3G18990	26.608	1.34e-21	94.4

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Tpr1g2859		B3	1.1e-11	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g2859	-		-	mtr:MTR_6g061070	628.632

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