Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g2859 | ATGTCCATTCACCATGGGCGTGGCAGTGAAGCTAAGGGAATGCACTTCTATCAGACTATTCAACTTCGTCAGTTGCAAGACCAACAACTTATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTATGTGTAAAATGTTTTGGGTGCAATTGGGTGATGATATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCATATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATTTGCAACGATGAACAAGAAGATAAAGAGAGTGATGATGATGATGATGATGATGATGGCTATGCTGAGATTACAAATGATTGTGACAATACCAAACAATCTCTCAAGAAAAAGAAAATCAACTCAAACGATAGTGCTACTACTTTTGCTACACCACAAGTGAAAAAGATTCACAAGAGAAAAATTAACATGAAGGCAACCCAGCAAAAAATCTCAGAGGCTAATGGAAAGATAGGAGGCAGCGGTAAGAAAGCTACGAAATCCTCAAAAACTGTAGATGCAAATAAGAGAAGGTGCACCAATTCTCATCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTGTGTGGAAGGTCATAAATTAAGATTGACGATACCTAGTTGGTTTTCGAAAGAGTACATGAATGAGTTGTTGCAAGGGAATGCAACGATTAGAAGTGTTAGTGATGAAAAGACATGGCACGTGACATTAAGCTTTGATGAACGCAATAGAAATTTTAAAATGGGTGGTGGTTGGAGATCATTTTCGCGAGAACATAACTTGCAAGTCGGTGATGAATGTAAATTTGAGATGACTGAACGAGAACCTCTATCATTCGCAATTACTATTGTTCAAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCGGTAGTAGATATGGATAATGTGGGCAATTTTGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAATAATTATGAAAGTCCGAATTTACATAATAAATTCAAGGTCTCTGTAACAACATTAGACAAGCTGATCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATGAAGATCTTGATTATGGGGGCTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGAAGATTGGAGACACTTGTTTTTTTGAGATGATTGATTTACAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG | 1425 | 0.3698 | MSIHHGRGSEAKGMHFYQTIQLRQLQDQQLMVPRNFVERYWKDVSNPISLRLPNESMCKMFWVQLGDDIWLQDWKRFARSLRCGDLLVFQYKGGSYFHVIIFDDSKLEIDYSSMICNDEQEDKESDDDDDDDDGYAEITNDCDNTKQSLKKKKINSNDSATTFATPQVKKIHKRKINMKATQQKISEANGKIGGSGKKATKSSKTVDANKRRCTNSHHPDENPNFTLKLSRSCVEGHKLRLTIPSWFSKEYMNELLQGNATIRSVSDEKTWHVTLSFDERNRNFKMGGGWRSFSREHNLQVGDECKFEMTEREPLSFAITIVQATKEPCPEQFQENQRVKEKSETSPVVDMDNVGNFGEGISRSCPKTHGINNYESPNLHNKFKVSVTTLDKLIIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNEDLDYGGFTKGWKEFVRECKVKIGDTCFFEMIDLQNHVFKVSIILDV* | 475 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g2859 | 474 | MobiDBLite | consensus disorder prediction | 203 | 218 | - | - | |
Tpr1g2859 | 474 | SMART | B3_2 | 225 | 325 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | SMART | B3_2 | 383 | 469 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | SMART | B3_2 | 16 | 105 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | CDD | B3_DNA | 223 | 321 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | MobiDBLite | consensus disorder prediction | 189 | 219 | - | - | |
Tpr1g2859 | 474 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 326 | 471 | - | - | |
Tpr1g2859 | 474 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 8 | 323 | - | - | |
Tpr1g2859 | 474 | ProSiteProfiles | B3 DNA-binding domain profile. | 226 | 325 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | SUPERFAMILY | DNA-binding pseudobarrel domain | 13 | 104 | IPR015300 | - | |
Tpr1g2859 | 474 | PANTHER | B3 DOMAIN-CONTAINING | 8 | 323 | - | - | |
Tpr1g2859 | 474 | PANTHER | B3 DOMAIN-CONTAINING | 326 | 471 | - | - | |
Tpr1g2859 | 474 | ProSiteProfiles | B3 DNA-binding domain profile. | 378 | 474 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | CDD | B3_DNA | 386 | 471 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | Gene3D | - | 201 | 326 | IPR015300 | - | |
Tpr1g2859 | 474 | Gene3D | - | 371 | 473 | IPR015300 | - | |
Tpr1g2859 | 474 | Gene3D | - | 8 | 106 | IPR015300 | - | |
Tpr1g2859 | 474 | SUPERFAMILY | DNA-binding pseudobarrel domain | 220 | 319 | IPR015300 | - | |
Tpr1g2859 | 474 | Pfam | B3 DNA binding domain | 238 | 321 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | Pfam | B3 DNA binding domain | 384 | 464 | IPR003340 | GO:0003677 | |
Tpr1g2859 | 474 | SUPERFAMILY | DNA-binding pseudobarrel domain | 384 | 469 | IPR015300 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g2859 | Tpr-Chr1 | 32951278 | 32962460 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g2859 | 16 | 320 | B3 DNA Binding Superfamily | AT3G18990 | 26.608 | 1.34e-21 | 94.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Tpr1g2859 | B3 | 1.1e-11 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g2859 | - | - | mtr:MTR_6g061070 | 628.632 |