Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2858 ATGTCATTTCATTATTTCCCTGAATTTTATAGGATAATATATCAAGATAAGAAGCTGAGTATTCCCAAGAAATATGTGGAGAAATATTGGAAAGGAATGTCAAACCCAATATTCCTTAGATTCCCAAATGGTGTTGAACAACAAATATTTTGGGGGGAGAGTAATACTAATGATGATATTTGCTTTCAAAAAAATTGGGAAAATTTTGCAAAGTGTCTCAAATATGGAAATCTCTTAACTTTTAAACACATAGGTGGACCATATTTCATGGTTAACATATTTGGTCTCAATGGTTTAGAAATAAACTATTCCAATGTAAAATCCATTGTTGATCAACAAGTTGTTGAAGAAGTAGCTAAAGAAATTGCAAAGCAACCACAAAGAAAAAGTAATATCAAGACAGAAATAAGTATGGATTGGGATTCTAAACACCAAAAATTCTCAGGTAGTAACAGAGGAGGCATGATGAAGAAGGCTAAAAAATGCACAACAACTGCTGCAGCTGCTAATCAAAATCCCTTTTTTGAAGTTGTATTGTCAAAAACATATGCTGCTGGCTTTTACTTGTCAATACCAAGCGAGTTTTCAACACAACAGTTGAAGAACTTGAAAGACATTGATGCAACCCTACGGGTGGGTGAGGACACGCCGATGCAAGTGGGCTTCAAGTTTTATAAGCACAATAAATCTATTATTAGTGGCGGTTGGCCGTTGTTTTGCCGAGAATATAACTTGAAAGTTAATGATGTTTGCAAGTTTGTGATGATTCAAAGCCGACCACTTTCATTCACTGTTATTATTGATCGAGCCAAAGACAGACCAAGAGCTAAGAAGTTGTCAAGATTGAACCAAAGGAGTAAGTAG 864 0.3507 MSFHYFPEFYRIIYQDKKLSIPKKYVEKYWKGMSNPIFLRFPNGVEQQIFWGESNTNDDICFQKNWENFAKCLKYGNLLTFKHIGGPYFMVNIFGLNGLEINYSNVKSIVDQQVVEEVAKEIAKQPQRKSNIKTEISMDWDSKHQKFSGSNRGGMMKKAKKCTTTAAAANQNPFFEVVLSKTYAAGFYLSIPSEFSTQQLKNLKDIDATLRVGEDTPMQVGFKFYKHNKSIISGGWPLFCREYNLKVNDVCKFVMIQSRPLSFTVIIDRAKDRPRAKKLSRLNQRSK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2858 287 CDD B3_DNA 173 269 IPR003340 GO:0003677
Tpr1g2858 287 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
Tpr1g2858 287 Gene3D - 154 273 IPR015300 -
Tpr1g2858 287 PANTHER B3 DOMAIN-CONTAINING 6 270 - -
Tpr1g2858 287 Gene3D - 3 98 IPR015300 -
Tpr1g2858 287 SMART B3_2 175 271 IPR003340 GO:0003677
Tpr1g2858 287 SMART B3_2 9 97 IPR003340 GO:0003677
Tpr1g2858 287 SUPERFAMILY DNA-binding pseudobarrel domain 18 104 IPR015300 -
Tpr1g2858 287 CDD B3_DNA 13 94 IPR003340 GO:0003677
Tpr1g2858 287 SUPERFAMILY DNA-binding pseudobarrel domain 170 270 IPR015300 -
Tpr1g2858 287 Pfam B3 DNA binding domain 174 266 IPR003340 GO:0003677
Tpr1g2858 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2858 Tpr-Chr1 32937952 32939625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2858 7 287 REM Transcription Factor Family AT4G31640 22.680 1.07e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2858 B3 7.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2858 - - mtr:MTR_1g035640 277.715