Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2856 ATGTCATTTCGAAAAGGCCCAAGTTTTAGGATAATAATAGTGCAAGATCAGAAAACATATAAGATTCCAAAGCTTTATAGGGAGAAATATTGGAAAGGAACACCAAACCCAATAATCCTAAGACTCCCAAATGGTTATGAACAAGAAATGTCTTGGGTGGAAAGAAATGGTGAAATTTTGTTTCAAAAAAATTGGAAAACTTTTTCAAAGGATCTGAATCTCAGTCATGGATGTGTTTTAACTTTTAAGTATATAGGTGGATCACATTTTAAGGTTAAGGTATTTGGTCCTAAATGTTTAGAAATAAACTATTCAAATATAAGATCTGAAAATGAAGATGTTGTTGAAGCTAAGGAAATTATTGAAGAAGTGAGTGATGAAAGTGAAGATGAGATTGAAATACCAATGCAAGCTCAAAGGAAAAGAAATGGCAAGAGAAAATTCCAAGGTAGGAACAGAGGAAATATGGTGAAGAAGGTTAAAAAGAACCCAACAAATGAAGATGTTAATGATGAGAATCCATTTTTTGAAGTTGTAATGACAAACTATTATGTCAAAGGATGTTACCTGTGGATACAAAGTCAGTTTTCAAGAGAACAGTTGAACAATTTTAGAGGCATTGCAACCCTAAGGGTTGGTAAGGACACCCCTATGGAAGTGAAAATAAGGTTTGATGATAACTATAAAAAAGCTATGATGTGTGCTGGTTGGAAGCTTTTTAGCAAAAAATATAATTTGCAAGTTGATGATACTTGTAAGTTTGTGATGACTCAACGCCGACCACCTTCGTTCATTGTTATTATTAATCGACCTAGAAAAGGATCAAGCCCTAAGAATTTGCAAGGGATCTCTTGTGATAATGATATTGCAAAGAGAAGATACATTAGAGGAGCTTCGTGGGGCCGTCCAAGAGTATATTTTGTTGAGGATTCAGAAAGTGGTATTATGGTGAAACATTTCAAATTCAAGATTTATGTGAAAGACGATTACAATTATCCTAGTTTACCAATGGAGTTTATGAATATAGTAGGATGTGATAAGAATGTGAATGTGGAGTTGAAAATGGGGAGAAGATCGTGGTTCGTAAAAGTGAACTATTTTGATAGTATGAAAAGCAGTAGATTTGGTAAAGGATGGAGACCATTTATTCAAGAATGCAATTTAATTGGGGAAATTTGTTCCTTTAATTTAATTGATGAGATCAATTTGGTATTTAATGTTTCAGTTGTAAGAAAAAACCATTGA 1245 0.3317 MSFRKGPSFRIIIVQDQKTYKIPKLYREKYWKGTPNPIILRLPNGYEQEMSWVERNGEILFQKNWKTFSKDLNLSHGCVLTFKYIGGSHFKVKVFGPKCLEINYSNIRSENEDVVEAKEIIEEVSDESEDEIEIPMQAQRKRNGKRKFQGRNRGNMVKKVKKNPTNEDVNDENPFFEVVMTNYYVKGCYLWIQSQFSREQLNNFRGIATLRVGKDTPMEVKIRFDDNYKKAMMCAGWKLFSKKYNLQVDDTCKFVMTQRRPPSFIVIINRPRKGSSPKNLQGISCDNDIAKRRYIRGASWGRPRVYFVEDSESGIMVKHFKFKIYVKDDYNYPSLPMEFMNIVGCDKNVNVELKMGRRSWFVKVNYFDSMKSSRFGKGWRPFIQECNLIGEICSFNLIDEINLVFNVSVVRKNH* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2856 414 SUPERFAMILY DNA-binding pseudobarrel domain 8 98 IPR015300 -
Tpr1g2856 414 SUPERFAMILY DNA-binding pseudobarrel domain 320 413 IPR015300 -
Tpr1g2856 414 Gene3D - 156 272 IPR015300 -
Tpr1g2856 414 Gene3D - 308 414 IPR015300 -
Tpr1g2856 414 Gene3D - 2 99 IPR015300 -
Tpr1g2856 414 Coils Coil 107 127 - -
Tpr1g2856 414 Pfam B3 DNA binding domain 175 264 IPR003340 GO:0003677
Tpr1g2856 414 ProSiteProfiles B3 DNA-binding domain profile. 175 272 IPR003340 GO:0003677
Tpr1g2856 414 PANTHER B3 DOMAIN-CONTAINING 332 412 - -
Tpr1g2856 414 PANTHER B3 DOMAIN-CONTAINING 4 270 - -
Tpr1g2856 414 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 332 412 - -
Tpr1g2856 414 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 270 - -
Tpr1g2856 414 SMART B3_2 175 272 IPR003340 GO:0003677
Tpr1g2856 414 SMART B3_2 9 98 IPR003340 GO:0003677
Tpr1g2856 414 SMART B3_2 321 413 IPR003340 GO:0003677
Tpr1g2856 414 CDD B3_DNA 174 270 IPR003340 GO:0003677
Tpr1g2856 414 SUPERFAMILY DNA-binding pseudobarrel domain 170 270 IPR015300 -
Tpr1g2856 414 CDD B3_DNA 322 411 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2856 Tpr-Chr1 32920968 32923338 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2856 17 104 B3 DNA Binding Superfamily AT1G49475 31.818 1.48e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2856 B3 6.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2856 - - mtr:MTR_1g035570 382.874