Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2855 ATGTCTTCTCAAGAACTTGATCATGGGAGCAATAGTGTCCACTTTTTCAAGATTATTCTTCAAACTACCCTTCAACAAGGAAAATTGAGAGTGCCTATAAGTTTTGTGAGGAGGCATTGGAAAGGAATAACAAACCCAGTTACTCTAAGGCTTCCAAATTCGACCGAAAAGAAAGTTTCTTGGGAGAAAACTAGTGATTACGATGTTTGGTTTTGTGATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGGGTGATTCACAACTTTTGGTGTTCCAATATCAAGGAAATTCTCTCTTTAATGTGATTGGATTTGGAAAATGCGGATTAGAAATAAAATACCCTTTAAGAGAAACTAGTGAAGAATATGAAGATGTGGAAGAAAGCGATTGTTCTTTGAAAATTACTGAGGATCCTTCATCATCGCGGTTTAAAAAGACAAAATCTCCATCACAATCTTCTAAAATTTTTAAGAAGATGAAAATCAATGCAAAAGAATCTAAGCATGCAGGAAGTAGCTGTGACAATCTTAAGAAGAGAGGCTATGATTTGTATGAAAAAGTGATGACAAATTTTGACTCTGATAAGAACTTCTTCACATGTATTCTCCAAAAGACATACATTGAGAGAGATCTCTTGGTAACAAACTACTCTTTATCACTTTATAAGTACTGA 675 0.3407 MSSQELDHGSNSVHFFKIILQTTLQQGKLRVPISFVRRHWKGITNPVTLRLPNSTEKKVSWEKTSDYDVWFCDGWKEFANYLSLGDSQLLVFQYQGNSLFNVIGFGKCGLEIKYPLRETSEEYEDVEESDCSLKITEDPSSSRFKKTKSPSQSSKIFKKMKINAKESKHAGSSCDNLKKRGYDLYEKVMTNFDSDKNFFTCILQKTYIERDLLVTNYSLSLYKY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2855 224 CDD B3_DNA 14 105 IPR003340 GO:0003677
Tpr1g2855 224 PANTHER B3 DOMAIN-CONTAINING 6 211 - -
Tpr1g2855 224 SUPERFAMILY DNA-binding pseudobarrel domain 10 106 IPR015300 -
Tpr1g2855 224 SMART B3_2 15 108 IPR003340 GO:0003677
Tpr1g2855 224 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Tpr1g2855 224 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 211 - -
Tpr1g2855 224 Gene3D - 8 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2855 Tpr-Chr1 32910578 32911647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2855 15 130 B3 DNA Binding Superfamily AT1G49475 38.793 7.93e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2855 - - mtr:MTR_4g119990 290.041