Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2854 ATGGAAGGAAGAGATGTTACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCAATTCAAATAATAATCAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTGATCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTGGAAAAGGACATGAACACTCCCTATTTTGAAGAGGGTTCCACGGCAATTTGTGGACAAATACTGGAAAAGTATACAAATCCAGTAGTCATGACATTACCAAATGGTGTTCAAAAAGAAATATTTTGGATAAAGCGCGACGGAGATGTCTGGTTTCAGAAAAATTGGGAGAAAATGGCAAAGTTTCTCAAATTTGGATATGTTGTTTTTTTCAAATACATGGGAGGATCATGTTTCCAGCTAGAGATATTTGGACTTAATTCTTTGGAAATTGATTATTCCAACATTAAGTTCATAGATCAAGTTGAGACTAATGACAATGGAGCTGAATTTGTTGAAGTGAGTGATGATGATATTGAAATGCCAAAAAGCAAAAAATCTAAAAGAACAAGAAAAGGAAAAGGAAAAGGAAAGGGAAAAATCTCAAGTAATGTAGGAGGGATGAATCCATGTTTTGAACTTACACTTACAAAAACTACTGCAAAAGGCTATTTATTTAGGATTCCATGTAAATTTTCAAGAAGATACATGGGAGATTTTGAAGGGATTGCAAGGATAAGAAGCTTTGGTGAGAAAAGGATTTGGAAGGTGACTGTGAAGTATGATCATGAACTTGATTATACTATTGTGAATAGAGGTTGGAAACCATTTGCTGATGAATATAACTTGCAAACTGGTGATGTTTGCAAGTTCGAGATGACTCGATCCGGTCCATTTTCTTTTACTATCACTATTAACCGAGTCGGAGAGTAG 960 0.3417 MEGRDVTLFVDKDRTWNVDLKLNSNNNQFTLSGGWSKFRDHYNLKFGDVCVFILNKCKGTVSFQVVIFSLEKDMNTPYFEEGSTAICGQILEKYTNPVVMTLPNGVQKEIFWIKRDGDVWFQKNWEKMAKFLKFGYVVFFKYMGGSCFQLEIFGLNSLEIDYSNIKFIDQVETNDNGAEFVEVSDDDIEMPKSKKSKRTRKGKGKGKGKISSNVGGMNPCFELTLTKTTAKGYLFRIPCKFSRRYMGDFEGIARIRSFGEKRIWKVTVKYDHELDYTIVNRGWKPFADEYNLQTGDVCKFEMTRSGPFSFTITINRVGE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2854 319 CDD B3_DNA 219 316 IPR003340 GO:0003677
Tpr1g2854 319 ProSiteProfiles B3 DNA-binding domain profile. 220 316 IPR003340 GO:0003677
Tpr1g2854 319 SUPERFAMILY DNA-binding pseudobarrel domain 3 67 IPR015300 -
Tpr1g2854 319 CDD B3_DNA 2 69 IPR003340 GO:0003677
Tpr1g2854 319 PANTHER B3 DOMAIN-CONTAINING 211 316 - -
Tpr1g2854 319 PANTHER B3 DOMAIN-CONTAINING 4 69 - -
Tpr1g2854 319 PANTHER B3 DOMAIN-CONTAINING 92 203 - -
Tpr1g2854 319 Pfam B3 DNA binding domain 4 63 IPR003340 GO:0003677
Tpr1g2854 319 Pfam B3 DNA binding domain 226 316 IPR003340 GO:0003677
Tpr1g2854 319 SUPERFAMILY DNA-binding pseudobarrel domain 218 312 IPR015300 -
Tpr1g2854 319 MobiDBLite consensus disorder prediction 187 208 - -
Tpr1g2854 319 ProSiteProfiles B3 DNA-binding domain profile. 1 71 IPR003340 GO:0003677
Tpr1g2854 319 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 92 203 - -
Tpr1g2854 319 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 211 316 - -
Tpr1g2854 319 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 69 - -
Tpr1g2854 319 Gene3D - 81 157 IPR015300 -
Tpr1g2854 319 Gene3D - 1 71 IPR015300 -
Tpr1g2854 319 SUPERFAMILY DNA-binding pseudobarrel domain 91 156 IPR015300 -
Tpr1g2854 319 SMART B3_2 1 71 IPR003340 GO:0003677
Tpr1g2854 319 SMART B3_2 221 318 IPR003340 GO:0003677
Tpr1g2854 319 Gene3D - 200 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2854 Tpr-Chr1 32905956 32909835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2854 93 187 B3 DNA Binding Superfamily AT1G49475 40.816 3.48e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2854 B3 3.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2854 - - mtr:MTR_1g035570 197.593