Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2852 ATGATTTCTCTTTCCGACAGGCTGACTAAAATTGCTTGTATTGACCGAACACAGTCCCTTCATCATCTTCTGCATGTCATCATGTCCTTTAAACACATTCATCATGGGCGTGGCAGTGATGCTAAGGGAATACACTTCTACCAAACTATTCAACTTCCTCACTTGCACAGCGAAGAACTAATGATTCCTAGGAATTTTGTAGAGGGATATTGGAAAGATGTATCAAATCCAATATCCTTTATACTTCCAAATGGGTCTGATTGCAAAATGTATTGGGTTCAACATGGTGATGATATTTGGCTTCAGAATTGGAAAAAGTTTTCAAGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACACAGGAGGATCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGAGATGCAATAATAATGACCAAGATTCAAGCAAACAATATATTAGTACTAAACTAGAAGAAGAAGAAGAAGAAGAGTGTGATGATGCTGACTGTGTTGAGGTTCCGAATGATAATGAAAATACCAAACAACCCTTCAAGAAAAAGAAAATCAACTCAAATGATTGTGCTGCTACACATACTCCTCAAAGAAGAAGGATTAATATGACTGCAACCGCGCAAAAAGTCTCAAAGGTGAATAGTAATAGAGGAGGCATGGGTAAGAAAGCTAAGAAATGCACAAAAATTAAAGATGGTAACAAGAGAAGCTGCACAAATTCTATTCCCAATGAGAATCCCAGTTTCACTCTCACATTACCTCGATCTTACGTGGAAGGTGATAAGTTAAAATTGAGGATACCAAATTGGTTTTCAAAAGAATACATGAATGAGTTGTTGCAAATGAATGCAACGATTAGAAGTGTTGGTGAGGACCGGACATGGCGTGTGAAGTTATTCTTTGAAGTACCCAAAAGAAACTTTTTAATGACCACCGGTTGGAAGCCATTTTCACAAGCACATAACTTGCAAGTTGGTGATGTATGCAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACGGTTACTATTATTCCAGCTACAAATAAACCATGCCCGGAGCAGTTTAAAGAAAACCAACGAGTCCAAGAAAACTCGGGTACAACTCCTATAGAAGATATGGAATATGTGGGCAATTTTGAAGAAGGAATTTCAGGGATCTTCCCAAAAACACATGATTCTGAAAGTCTGAATTTACACAATAAGTTCAAGGTTTTTGTAACATCATTATTCATGCTGGTCATACCAAGTGAGTTCTTGACGAGACACAATATTTCTAGTGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTTTAATCAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTGCAAAATCACGTGTTTAAGGTTTCAATTATCCTAGACTAG 1512 0.3677 MISLSDRLTKIACIDRTQSLHHLLHVIMSFKHIHHGRGSDAKGIHFYQTIQLPHLHSEELMIPRNFVEGYWKDVSNPISFILPNGSDCKMYWVQHGDDIWLQNWKKFSRSLRCGDLLVFQYTGGSDFHVIILDDSKLEIDYSSMRCNNNDQDSSKQYISTKLEEEEEEECDDADCVEVPNDNENTKQPFKKKKINSNDCAATHTPQRRRINMTATAQKVSKVNSNRGGMGKKAKKCTKIKDGNKRSCTNSIPNENPSFTLTLPRSYVEGDKLKLRIPNWFSKEYMNELLQMNATIRSVGEDRTWRVKLFFEVPKRNFLMTTGWKPFSQAHNLQVGDVCKFEMTQREPLSFTVTIIPATNKPCPEQFKENQRVQENSGTTPIEDMEYVGNFEEGISGIFPKTHDSESLNLHNKFKVFVTSLFMLVIPSEFLTRHNISSGNSVELKVGEGTWFVEVSFNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEMIDVQNHVFKVSIILD* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2852 503 CDD B3_DNA 413 501 IPR003340 GO:0003677
Tpr1g2852 503 ProSiteProfiles B3 DNA-binding domain profile. 259 358 IPR003340 GO:0003677
Tpr1g2852 503 Pfam B3 DNA binding domain 417 499 IPR003340 GO:0003677
Tpr1g2852 503 Pfam B3 DNA binding domain 272 356 IPR003340 GO:0003677
Tpr1g2852 503 SMART B3_2 412 499 IPR003340 GO:0003677
Tpr1g2852 503 SMART B3_2 46 135 IPR003340 GO:0003677
Tpr1g2852 503 SMART B3_2 258 358 IPR003340 GO:0003677
Tpr1g2852 503 SUPERFAMILY DNA-binding pseudobarrel domain 416 498 IPR015300 -
Tpr1g2852 503 Gene3D - 38 136 IPR015300 -
Tpr1g2852 503 PANTHER B3 DOMAIN-CONTAINING 38 355 - -
Tpr1g2852 503 PANTHER B3 DOMAIN-CONTAINING 412 501 - -
Tpr1g2852 503 Gene3D - 237 359 IPR015300 -
Tpr1g2852 503 Gene3D - 400 502 IPR015300 -
Tpr1g2852 503 ProSiteProfiles B3 DNA-binding domain profile. 408 503 IPR003340 GO:0003677
Tpr1g2852 503 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 412 501 - -
Tpr1g2852 503 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 38 355 - -
Tpr1g2852 503 SUPERFAMILY DNA-binding pseudobarrel domain 251 356 IPR015300 -
Tpr1g2852 503 SUPERFAMILY DNA-binding pseudobarrel domain 44 133 IPR015300 -
Tpr1g2852 503 CDD B3_DNA 256 356 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2852 Tpr-Chr1 32891029 32894769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2852 46 353 B3 DNA Binding Superfamily AT3G18990 22.714 2.33e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2852 B3 3.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2852 - - mtr:MTR_6g061070 621.313