Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2851 ATGGAGTATATACACCGTTTTGGATTTGTATGGACATTGGGGCTAAAAGTCAAAGGGAACAAGTGTTTTCTGTATTCACCACCAACCACCAACACAACACAGTCTCTTCATCTTCATCATCATTACTATCATATGTCATTTGAAAATTATGGGCGTGGCAGTGATGCTAAGGGCATTCACTTCTACCAAACTATTCAACTTCCTCAGTTACAAGACCAAAACCTAATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCTCTTAAACTTCCAAATGGGTCTGATTGCAAAATGTGTTGGGTACAACAAGGTGAAGATATTTGGATTCAGAATTGGAAAAGGTTTGCACGGTCACTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAACTAGAAATTGACTATTCAAGTATGAGGTACAATGATGACCAAGAAGAGGAAGAGAGTGAAAATACTGAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGGTAGTGTTGTTACACCTCAAGGGACTAGCATTGACAGGAGAAAAATTAATATGAATGCAATCCAGCAAAAAGTTTCAGAGGCTAATAGTTACAGCGGAGGTATGGGTAAGACAGTTAAGAAATGCGCTAAAACTAAAGATGGGAATGAGAGAAGCTGCACAAGTTCTAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTTGAAGGTGGAAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAATGAATGCAACCATTAGAAGTGTTGGTGAGGACAGGACATGGGACGTGAAGTTAATCTTTGATGAACGCAAGAGAAATTTTGAAATGAGAACTGGTTGGAAGTCATTTTCACAAGAACATAACTTGCAAATTGGTGATGTATGTAAATTTGAGATGACTCAACGAAGACCACTTTCATTCACAATTACTATTAACCGAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGTGTCCACGAAAAATCAGAGACAACTCCGGTAAAAGATATGGAATATGTGGGCAATTTTGAAGAAGGACTTTTAAGGAGCTGCGCCAAAACACATGGTCTTAAGAATTCTGAAAGTCCGAATTTACACAATACATTCAAGGTTTTTGTAACATCATTATTCATGCTGGTCGTACCAAGTGAGTTCTTGAAGAAACACAATATTTCTAGTGGAAATTCAGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTTTAATCAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATTGTTGATTTGGAAAATCATGTGTTCAAGGTTTCAGTTATCCTAGATGTTTAG 1485 0.3724 MEYIHRFGFVWTLGLKVKGNKCFLYSPPTTNTTQSLHLHHHYYHMSFENYGRGSDAKGIHFYQTIQLPQLQDQNLMIPRNFVERYWKDVSNPISLKLPNGSDCKMCWVQQGEDIWIQNWKRFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSMRYNDDQEEEESENTEQPLKKKKINSNGSVVTPQGTSIDRRKINMNAIQQKVSEANSYSGGMGKTVKKCAKTKDGNERSCTSSNPSFTLTLPRSYVEGGKIRLRIPTQFSKEYMNELLQMNATIRSVGEDRTWDVKLIFDERKRNFEMRTGWKSFSQEHNLQIGDVCKFEMTQRRPLSFTITINRATKEPCPEQFQENQRVHEKSETTPVKDMEYVGNFEEGLLRSCAKTHGLKNSESPNLHNTFKVFVTSLFMLVVPSEFLKKHNISSGNSVELKVGEGTWFVEVSFNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEIVDLENHVFKVSVILDV* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2851 494 CDD B3_DNA 75 148 IPR003340 GO:0003677
Tpr1g2851 494 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 385 490 - -
Tpr1g2851 494 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 53 344 - -
Tpr1g2851 494 SUPERFAMILY DNA-binding pseudobarrel domain 406 489 IPR015300 -
Tpr1g2851 494 CDD B3_DNA 243 343 IPR003340 GO:0003677
Tpr1g2851 494 SUPERFAMILY DNA-binding pseudobarrel domain 59 149 IPR015300 -
Tpr1g2851 494 Gene3D - 385 493 IPR015300 -
Tpr1g2851 494 Gene3D - 224 346 IPR015300 -
Tpr1g2851 494 ProSiteProfiles B3 DNA-binding domain profile. 246 345 IPR003340 GO:0003677
Tpr1g2851 494 Pfam B3 DNA binding domain 257 343 IPR003340 GO:0003677
Tpr1g2851 494 Pfam B3 DNA binding domain 407 484 IPR003340 GO:0003677
Tpr1g2851 494 SMART B3_2 245 345 IPR003340 GO:0003677
Tpr1g2851 494 SMART B3_2 61 150 IPR003340 GO:0003677
Tpr1g2851 494 SMART B3_2 402 489 IPR003340 GO:0003677
Tpr1g2851 494 CDD B3_DNA 403 491 IPR003340 GO:0003677
Tpr1g2851 494 ProSiteProfiles B3 DNA-binding domain profile. 398 494 IPR003340 GO:0003677
Tpr1g2851 494 MobiDBLite consensus disorder prediction 161 194 - -
Tpr1g2851 494 Gene3D - 54 151 IPR015300 -
Tpr1g2851 494 SUPERFAMILY DNA-binding pseudobarrel domain 240 342 IPR015300 -
Tpr1g2851 494 PANTHER B3 DOMAIN-CONTAINING 53 344 - -
Tpr1g2851 494 PANTHER B3 DOMAIN-CONTAINING 385 490 - -
Tpr1g2851 494 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2851 Tpr-Chr1 32884142 32888947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2851 61 343 B3 DNA Binding Superfamily AT3G18990 25.148 2.82e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2851 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2851 - - mtr:MTR_6g061070 618.231