Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2850 ATGTCATTGTATAACACTCCAAAGTTCTTCAAGATCATCCAAAATCATGAACTTCAAAATGGAGAAATCAGGATTCCTAAGAAATTTGTGGAGAAATATTGGAAAGGAGTACCAAATCCCATAGTCATTATACTTCCCAATGGTGCTCAACAAGAAATATTTTGGGCCAAACGTGATGGTGATATTTGGTTCAAGAAAAATTGGGACAAAATTTCAAAGTTTCTAAAATTTGGTTATTTAGTTATTTTTAAATACATTGGAGGAGCATCTTTTAAGCTTAAGATATTTGGAATCAATTGTTTGGAAATTGACTGTCCCATAGATGAAGAAGTTGTGAGTGATGAAAGTGTTGAAGCTGAATTTGGTACCTCAAGTGATGAATTTGTTGATCAAACTGATATTGCTGGTACATCTCATAGAAGAATATGTGGAAGAAATAGAGGAAGCATGAAAAAAAGGGTTAAAAATTGCTCAACAAGAAAAACCACTAATGGAATAGGTACTAGCAGAGGTGTGGCTAATCCTAGTTTTGAACATACACTCACAACTACTTCTGCACATGGCTATATATTAAGGATACCATGTGAGTTTTCAAGAAGATTCATGGAAGCTTATGAAGGGATTGCATGGATAAGAAGACTTGGTGAGGATAGAACTTGGGAGGTGGATGTGAAATATGATCCTGAAGGTGATTATTCCATTCTGAATCGTGGTTGGAAACAATTTTCCGATCAATATAACTTGCAAATCGGTGATACTTGCGAGTTTCAGATGACTCGATCCAAACCACCGTCTTTTACTGTCGCTATTATCCGAGCATGA 822 0.3564 MSLYNTPKFFKIIQNHELQNGEIRIPKKFVEKYWKGVPNPIVIILPNGAQQEIFWAKRDGDIWFKKNWDKISKFLKFGYLVIFKYIGGASFKLKIFGINCLEIDCPIDEEVVSDESVEAEFGTSSDEFVDQTDIAGTSHRRICGRNRGSMKKRVKNCSTRKTTNGIGTSRGVANPSFEHTLTTTSAHGYILRIPCEFSRRFMEAYEGIAWIRRLGEDRTWEVDVKYDPEGDYSILNRGWKQFSDQYNLQIGDTCEFQMTRSKPPSFTVAIIRA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2850 273 CDD B3_DNA 7 96 IPR003340 GO:0003677
Tpr1g2850 273 CDD B3_DNA 175 272 IPR003340 GO:0003677
Tpr1g2850 273 ProSiteProfiles B3 DNA-binding domain profile. 176 273 IPR003340 GO:0003677
Tpr1g2850 273 Gene3D - 2 100 IPR015300 -
Tpr1g2850 273 Gene3D - 152 273 IPR015300 -
Tpr1g2850 273 PANTHER B3 DOMAIN-CONTAINING 4 273 - -
Tpr1g2850 273 SUPERFAMILY DNA-binding pseudobarrel domain 173 272 IPR015300 -
Tpr1g2850 273 SMART B3_2 9 99 IPR003340 GO:0003677
Tpr1g2850 273 SMART B3_2 177 265 IPR003340 GO:0003677
Tpr1g2850 273 SUPERFAMILY DNA-binding pseudobarrel domain 6 99 IPR015300 -
Tpr1g2850 273 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 273 - -
Tpr1g2850 273 Pfam B3 DNA binding domain 177 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2850 Tpr-Chr1 32869892 32871946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2850 7 104 B3 DNA Binding Superfamily AT3G18990 31.000 5.41e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2850 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2850 - - mtr:MTR_1g050845 247.284