Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2849 ATGCAAAATCATGAACTTTACAATGGAGAGCTTAGGGTTCCACGGCAATTTGTGGACAAATACTGGAAAAGTATACCAAATCCAGTAGTCATGACATTACCAAATGGTGTTCAAAAAGAAATATTTTGGATAAAGCGCGACGGAGATGTCTGGTTTCAGAAAAATTGGGAGAAAATGGCTAAGTTTCTCAAATTTGGATATGTTGTTTTTTTCAAATACATGGGAGGATCATGTTTCAAGCTAGAGATACTTGGACTTAATTCTTTGGAAATTGATTATTCCAACATTAAGTTCATAGATCAAGTTGAGAATAATGACAATGGAGCTGAATTTGTTGAAGTGAGTGATGATGATATTGAAATGCCAAAAAGCAAAAAATCTAAAAGAACAAGAAAAGGAAAAGGAAAGGGAAAAATCTCAAGTAATGTAGGAGGGATGAATCCATTTTTTGAACTTACACTTACAAAAACTACTGCAAAAGGCTATTTATTTAGGATTCCATGTAAATTTTCAAGAAGATACATGGGAGATTTTGAAGGGATTGCAAGGATAAGAATCTTTGGTGAGAAAAGGATTTGGAAGGTGACTGTGAAGTATGATCATGAACTTGATTATACTATTGTGAATAGAGGTTGGAAACCATTTGCCGAAGAATATAACTTGCAAACCGGTGATGTTTGCAAGTTTGAGATGACTCGATCCGGTCCAATTTCTTTTACTATCACTATTAACCGAGTCGGAGAGTAG 747 0.3467 MQNHELYNGELRVPRQFVDKYWKSIPNPVVMTLPNGVQKEIFWIKRDGDVWFQKNWEKMAKFLKFGYVVFFKYMGGSCFKLEILGLNSLEIDYSNIKFIDQVENNDNGAEFVEVSDDDIEMPKSKKSKRTRKGKGKGKISSNVGGMNPFFELTLTKTTAKGYLFRIPCKFSRRYMGDFEGIARIRIFGEKRIWKVTVKYDHELDYTIVNRGWKPFAEEYNLQTGDVCKFEMTRSGPISFTITINRVGE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2849 248 Gene3D - 1 87 IPR015300 -
Tpr1g2849 248 SUPERFAMILY DNA-binding pseudobarrel domain 147 245 IPR015300 -
Tpr1g2849 248 PANTHER B3 DOMAIN-CONTAINING 3 133 - -
Tpr1g2849 248 PANTHER B3 DOMAIN-CONTAINING 128 245 - -
Tpr1g2849 248 SMART B3_2 149 247 IPR003340 GO:0003677
Tpr1g2849 248 SMART B3_2 1 87 IPR003340 GO:0003677
Tpr1g2849 248 Gene3D - 125 248 IPR015300 -
Tpr1g2849 248 SUPERFAMILY DNA-binding pseudobarrel domain 6 86 IPR015300 -
Tpr1g2849 248 CDD B3_DNA 148 245 IPR003340 GO:0003677
Tpr1g2849 248 Pfam B3 DNA binding domain 149 240 IPR003340 GO:0003677
Tpr1g2849 248 ProSiteProfiles B3 DNA-binding domain profile. 149 245 IPR003340 GO:0003677
Tpr1g2849 248 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 128 245 - -
Tpr1g2849 248 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2849 Tpr-Chr1 32866455 32867614 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2849 147 248 B3 DNA Binding Superfamily AT3G18990 30.097 3.07e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2849 B3 2e-09 CL0405