Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2848 ATGTCAAATTATTGCCCTAAAGAGTTCTTCAAGATAGTGCAAAATCATGAACTGCATAACGGAGAGCTTAGGCTTCCCAAGAAATTTGTGAAGAATCATTGGAAAGAAATATCAAATCCAGTAGTCCTTAAACTCCCAAATAATGATCGACATAAAATATCTTGGGTGAAGCGCGACGGTGATATTTGGCTTCAAAAGAATTGGGAAAATATTGCAAAGTTTCTTAAACTAGGCTTTGTTGTAGTTTTTAAATACAAAGGAAGATCATATTTTAAGGTTAAGATATTTGGTCTCAATACATTGGAAATTGATTATTCCAATATAACAAAGTTCATAGATGAAAGTTGTGAAGTTATTGTTGATGATAGTGATGATGATGATAGTGTTGGTCAAATGAATGGTGTTGGTACATCTCAAAGGGGGAAAACTCGCAAGAGAAAAATGAATGGTAGTAAAAGAGGTAGGAAGGCTAAAAAATCTTCAACAAGTGGAGCTGGAGCTGTTAATGTGAATCCAAGTTTTGAAGTGAAATTGTCAAAAACTTATGCCCTGCCCGATGGCTATATGTTGAGGTTACCAAGTGATTTTTCTCAAAAATACTTGAACGGGTATTATGGGAGTGCAAGCATTAGAGTTGGTGAGGACATGGCTATGGAAGTGACGCTGAGGTTTCAAGATATTGATTATAATAGAACATCCTTTATATCCGATGGTTGGAAACCAGTTATTCAAAAATATAACTTGCAAGTTGATGATAGATGTGAATTTAAGATGATACAACAACACCCACCTTCATTCACTCTTACTATTAATGAAGCTGGAGGAATGATCTCTTCTTGTGATAATAATATTGGGAAGAGAAGAGCCATTGAAGGAACTTCTAGGAGCTACCATGTTCAATCGAATTTAGAAGGTCATATAATCGAGATTTGTGTGAGCTCTAACTACCCGTATATTGATAGTGAGGTTTTTGATCGACATAGAGAATGGCATAACAAAGATGTGCAGTTGAAAATGGGACAAAAATCGTGGTTTGTAACAGTGAAATATTATGGGAAAACTTGTAAGTTCTATAAAGGTTGGAGACCATTTAAGAAAGATTGCAATCTGAAGAATGGAGATAGTTGTTTCCTCAAGTTGATTGATGAAGAAAATTTACTGTTTGAAGTTTCATTTGAATGA 1182 0.3477 MSNYCPKEFFKIVQNHELHNGELRLPKKFVKNHWKEISNPVVLKLPNNDRHKISWVKRDGDIWLQKNWENIAKFLKLGFVVVFKYKGRSYFKVKIFGLNTLEIDYSNITKFIDESCEVIVDDSDDDDSVGQMNGVGTSQRGKTRKRKMNGSKRGRKAKKSSTSGAGAVNVNPSFEVKLSKTYALPDGYMLRLPSDFSQKYLNGYYGSASIRVGEDMAMEVTLRFQDIDYNRTSFISDGWKPVIQKYNLQVDDRCEFKMIQQHPPSFTLTINEAGGMISSCDNNIGKRRAIEGTSRSYHVQSNLEGHIIEICVSSNYPYIDSEVFDRHREWHNKDVQLKMGQKSWFVTVKYYGKTCKFYKGWRPFKKDCNLKNGDSCFLKLIDEENLLFEVSFE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2848 393 SUPERFAMILY DNA-binding pseudobarrel domain 171 269 IPR015300 -
Tpr1g2848 393 MobiDBLite consensus disorder prediction 140 159 - -
Tpr1g2848 393 PANTHER B3 DOMAIN-CONTAINING 7 270 - -
Tpr1g2848 393 PANTHER B3 DOMAIN-CONTAINING 318 392 - -
Tpr1g2848 393 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Tpr1g2848 393 Gene3D - 150 273 IPR015300 -
Tpr1g2848 393 Gene3D - 286 393 IPR015300 -
Tpr1g2848 393 ProSiteProfiles B3 DNA-binding domain profile. 342 393 IPR003340 GO:0003677
Tpr1g2848 393 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 270 - -
Tpr1g2848 393 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 318 392 - -
Tpr1g2848 393 CDD B3_DNA 331 392 IPR003340 GO:0003677
Tpr1g2848 393 CDD B3_DNA 7 96 IPR003340 GO:0003677
Tpr1g2848 393 Gene3D - 2 100 IPR015300 -
Tpr1g2848 393 SMART B3_2 174 274 IPR003340 GO:0003677
Tpr1g2848 393 SMART B3_2 9 99 IPR003340 GO:0003677
Tpr1g2848 393 SMART B3_2 308 391 IPR003340 GO:0003677
Tpr1g2848 393 MobiDBLite consensus disorder prediction 124 164 - -
Tpr1g2848 393 SUPERFAMILY DNA-binding pseudobarrel domain 313 387 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2848 Tpr-Chr1 32850250 32852628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2848 6 292 B3 DNA Binding Superfamily AT3G18990 24.100 1.81e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2848 - - mtr:MTR_1g035620 432.565