Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2846 ATGAAACATGACACATTCGAGCTTACTGTCAATTCATCCTTATACCCGTATGTACCAAATGCTTTTTTGCGTAGGCACAAAGAATGTTGGGGAAAATTCGTGGAGTTGAAAGTGGATGAAAAGTCATGGTCTGTAAAAGTGAAGTATTATCCTGGAGGCAGTAAATTATCTGTAGGTTGGACAGAGTTTAAGGAAGAATGCAAATTGGAGATTGGAGACCGTTGTCGCTTTAAGTTGATTGATGAGAAAAAATTTGTGTTTGAAGTTTCATTTGAAAGAGTTTTATATGTTTAA 294 0.3571 MKHDTFELTVNSSLYPYVPNAFLRRHKECWGKFVELKVDEKSWSVKVKYYPGGSKLSVGWTEFKEECKLEIGDRCRFKLIDEKKFVFEVSFERVLYV* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2846 97 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Tpr1g2846 97 PANTHER B3 DOMAIN-CONTAINING 10 93 - -
Tpr1g2846 97 CDD B3_DNA 17 93 IPR003340 GO:0003677
Tpr1g2846 97 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 93 - -
Tpr1g2846 97 Pfam B3 DNA binding domain 17 90 IPR003340 GO:0003677
Tpr1g2846 97 Gene3D - 2 95 IPR015300 -
Tpr1g2846 97 SMART B3_2 6 93 IPR003340 GO:0003677
Tpr1g2846 97 SUPERFAMILY DNA-binding pseudobarrel domain 7 87 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2846 Tpr-Chr1 32834481 32835216 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2846 17 94 REM Transcription Factor Family AT1G49480 37.179 1.10e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2846 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2846 - - mtr:MTR_1g035620 112.464