Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2845 ATGTCATTTACAAAAGGCCCAAGTTTTAGGATAATAATAGTGCAAGATAAGAAATCATATAAGATTCCAAAGCTTTATAGGGAGAAATATTGGAAAGGAATTCCAAACCCAATAATCCTAAGACTCCGAAATGGTTTTGAACAAGAAATATCTTGGGTGGAAAGAAATGGTGAAATTTTGTTTCAAAAAAATTGGAAAACTTTTTCAAAGCATGTGAATTTGAGCCATGGATGTGTCTTAACTTTCAAATACATAGGTGGATCACATTTTAAGGTTAAGGTATTTGGTCCTAAATGTTTAGAAATAAACTATTCAAAAATAAACTCTGAAAATGAAGAACATGTTGAAGCTAGAGAAAAAGCTAAGGAAATTATTGAAGAAGTGAGTGATGAAATACCAATGCAAGCTCAAAGGAAAAGAAATGGCAAGAGAAAATTCCAAGGTAGGAACAGAGGGAATATGGTGAAGAAGGTTAAAAAGTACCCAACAAATGAAGATGTTAATGTTGAGAATCCATTTTTTGAAGTTGTAATGACAAACTTTTATGTCAAAGGATATTTCCTGTGGATACAAAATCAGTTTTCAAGAGAATACTTAAACAATTTTAGAGGCATTGCAACCCTAAGGGTTGGTAAGGACACCCCTATGGAAGTGAAAATAAGGTTTGATGATAACTATAAAAAAGCTATGATGTGTGCTGGTTGGAAGCTTTTTAGCAAAAAATATAATTTGCAAGTTGATGATACTTGTAAGTTTGTGATGACTCAACGCCGACCACCTTCGTTCATTGTTATTATTAATCGAGCTAGAAAAGGAAAAGGGATCTCTTGTGATAATAATATTGCAAAGAGGAGATACCTTGGAGGAACTTCTAGGAGCCGTCCAAGAGTATATTATGTTGAGGATTCAGAAAGTGGTATTATGGTGAAACATTTCAAATTCAAGATTTATGTGAAAGACGATTACAATTATCCTAGTTTACCAATGGAGTTTATGAATATAGTAGGATGTGATAAGAATGTGAATGTGGAGTTGAAAATGGGGAGAAGATCGTGGTTCGTAAAAGTGAATTATTTTGATAGTATGAAAAGCAGTAGATTTGGTAAAGGATGGAGACCATTTATTCAAGAATGCAATTTAATTGGGGAAATTTGTTCCTTTAATTTAATTGATGAGATAAATTTGGTATTTAATGTTTCAGTTGTAAGAAAAACACATTGA 1221 0.3235 MSFTKGPSFRIIIVQDKKSYKIPKLYREKYWKGIPNPIILRLRNGFEQEISWVERNGEILFQKNWKTFSKHVNLSHGCVLTFKYIGGSHFKVKVFGPKCLEINYSKINSENEEHVEAREKAKEIIEEVSDEIPMQAQRKRNGKRKFQGRNRGNMVKKVKKYPTNEDVNVENPFFEVVMTNFYVKGYFLWIQNQFSREYLNNFRGIATLRVGKDTPMEVKIRFDDNYKKAMMCAGWKLFSKKYNLQVDDTCKFVMTQRRPPSFIVIINRARKGKGISCDNNIAKRRYLGGTSRSRPRVYYVEDSESGIMVKHFKFKIYVKDDYNYPSLPMEFMNIVGCDKNVNVELKMGRRSWFVKVNYFDSMKSSRFGKGWRPFIQECNLIGEICSFNLIDEINLVFNVSVVRKTH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2845 406 Pfam B3 DNA binding domain 174 266 IPR003340 GO:0003677
Tpr1g2845 406 SUPERFAMILY DNA-binding pseudobarrel domain 312 404 IPR015300 -
Tpr1g2845 406 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 269 - -
Tpr1g2845 406 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 321 404 - -
Tpr1g2845 406 CDD B3_DNA 172 268 IPR003340 GO:0003677
Tpr1g2845 406 Gene3D - 2 99 IPR015300 -
Tpr1g2845 406 SUPERFAMILY DNA-binding pseudobarrel domain 8 98 IPR015300 -
Tpr1g2845 406 Gene3D - 299 406 IPR015300 -
Tpr1g2845 406 Gene3D - 153 271 IPR015300 -
Tpr1g2845 406 SUPERFAMILY DNA-binding pseudobarrel domain 168 268 IPR015300 -
Tpr1g2845 406 ProSiteProfiles B3 DNA-binding domain profile. 173 270 IPR003340 GO:0003677
Tpr1g2845 406 PANTHER B3 DOMAIN-CONTAINING 4 269 - -
Tpr1g2845 406 PANTHER B3 DOMAIN-CONTAINING 321 404 - -
Tpr1g2845 406 Coils Coil 107 131 - -
Tpr1g2845 406 SMART B3_2 9 98 IPR003340 GO:0003677
Tpr1g2845 406 SMART B3_2 313 405 IPR003340 GO:0003677
Tpr1g2845 406 SMART B3_2 174 270 IPR003340 GO:0003677
Tpr1g2845 406 CDD B3_DNA 314 403 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2845 Tpr-Chr1 32826603 32829053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2845 17 111 B3 DNA Binding Superfamily AT1G49475 27.368 7.26e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2845 B3 2.4e-07 CL0405