Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2844 ATGTCAATTCATTGTTACCCTGAATTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAATATGTGGAGAAATATTGGAAACATTTATCAAACCCAATATTCCTTAGATTTCCAAATGGTGTTGAAAAAAAAATATTTTGGGTGGAGAGAAATGGTTATATTTGCTTTCAAAAAAATTGGAAAAATATTTCAAAGTCTCTAAAATATGGATATCTCTTAACTTTTAAATACTTAGGTGGAACATATTTTAAGGTTAAGATATTTGCTGGTAATGCTTTAGAAATAAACTACTCCAATATCAAATCCATAGATGAAGATGAAGTTGTTGAAGATGAAGAAGTTATTGAAGTGAGTGAAGAAGAGTGTGAAATAGTTAAACAACCTCAAAGGACAACAAAAAGTAAGAGAAAAATTCACATGGATTTGGATTCTACACAACAAAAAATTTCTAGTGGTAACAGAAGAGGCATGGTCAAAAGGGTTGAAAAATGTTCAACAAGTGAAAATCCCTTTTTTGAAATTAAATTGAGAAAATCGTACGCTTATGGCAACTTCATGGCATTACCAAGTAAATTTTCAAGAGAACATTTGGAAAATTTTGTAGGCACTGCAACACTACAAGTTGGTAACGTCGACATGGCTATGAAAGTGAGAATGAAGTTTGATTATGAAAATAGAAGATCTATTCTAAGTGGTGGTTGGAAGTTATTTAGCGAAAAATATAACTTGCAAGTTAAGGATTCTTGTAAGTTTGTCATGATTCAACGCCAACCACTTTTATTCACTGTTATTATTAAACGATCCATATAA 822 0.3078 MSIHCYPEFHRIILQDKKLRIPKKYVEKYWKHLSNPIFLRFPNGVEKKIFWVERNGYICFQKNWKNISKSLKYGYLLTFKYLGGTYFKVKIFAGNALEINYSNIKSIDEDEVVEDEEVIEVSEEECEIVKQPQRTTKSKRKIHMDLDSTQQKISSGNRRGMVKRVEKCSTSENPFFEIKLRKSYAYGNFMALPSKFSREHLENFVGTATLQVGNVDMAMKVRMKFDYENRRSILSGGWKLFSEKYNLQVKDSCKFVMIQRQPLLFTVIIKRSI* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2844 273 Gene3D - 3 96 IPR015300 -
Tpr1g2844 273 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 271 - -
Tpr1g2844 273 SUPERFAMILY DNA-binding pseudobarrel domain 7 93 IPR015300 -
Tpr1g2844 273 ProSiteProfiles B3 DNA-binding domain profile. 175 273 IPR003340 GO:0003677
Tpr1g2844 273 PANTHER B3 DOMAIN-CONTAINING 6 271 - -
Tpr1g2844 273 Gene3D - 154 273 IPR015300 -
Tpr1g2844 273 SUPERFAMILY DNA-binding pseudobarrel domain 170 271 IPR015300 -
Tpr1g2844 273 Pfam B3 DNA binding domain 176 268 IPR003340 GO:0003677
Tpr1g2844 273 CDD B3_DNA 174 271 IPR003340 GO:0003677
Tpr1g2844 273 SMART B3_2 9 95 IPR003340 GO:0003677
Tpr1g2844 273 SMART B3_2 176 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2844 Tpr-Chr1 32807258 32808911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2844 7 271 B3 DNA Binding Superfamily AT3G18990 25.816 1.14e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2844 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2844 - - mtr:MTR_1g035640 302.753