Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2843 ATGTCATTTCATTATTTCCCTGAATTTCATAGGATAATATATCAAGATAAGAAGCTGAGTATTCCCAAGAAATATGTGGAGAAATATTGGAAAGGAATGTCAAACCCAATATTCCTTAGATTCCCAAATGGTGTTGAACAACAAATATTTTGGGGGGAGAGTAATACTAATGATGATATTTGCTTTCAAAAAAATTGGGAAAATTTTGCAAAGTGTCTCAAATATGGAAATCTCTTAACTTTTAAACACATAGGTGGACCATATTTCATGGTTAACATATTTGGTGTCAATGGTTTAGAAATAAACTATTCCAATGTCAAATCCATTGTTGATCAACAAGTTGCTAAAGAAATTGCAAAGCAACCACAAAGAAAAAGTAATATCAAGAGAGAAATAAGTGCTGATGAACAAGTTGTTGAAGAAGGCATGATGAAGAAGGCTAAAAAATGCACAACAACTGGTAATGTGGGAGACAATAATCAAAATCCCTTTTTTGAAGTTGTATTGTCAAAAACGTATGCTGCTGGCTTTTACTTGTCAATACCAAGCGAGTTTTCAACACAACAATTGAAGAAGTTGGAAGACATTAATGCAACCCTACGGGTGGGTGAGGACACGCCGATGCAAGTGAGCTTTAAGTTTTATAAGTTCAATAAATCTATTATTAGTGGCGGTTGGACGTTGTTTTGCCGAGAATATAACTTGAAAGTTAACGATGTTTGCAAGTTTGTGATGATTCAAAGCCGACCACTTTCATTCAATGTTATTATTGATCGAGCCAAAGACAGACCAAGAGCTAAGAAGTTGTCAAGATTGAACCAAAGGAGTAAGTAG 834 0.3453 MSFHYFPEFHRIIYQDKKLSIPKKYVEKYWKGMSNPIFLRFPNGVEQQIFWGESNTNDDICFQKNWENFAKCLKYGNLLTFKHIGGPYFMVNIFGVNGLEINYSNVKSIVDQQVAKEIAKQPQRKSNIKREISADEQVVEEGMMKKAKKCTTTGNVGDNNQNPFFEVVLSKTYAAGFYLSIPSEFSTQQLKKLEDINATLRVGEDTPMQVSFKFYKFNKSIISGGWTLFCREYNLKVNDVCKFVMIQSRPLSFNVIIDRAKDRPRAKKLSRLNQRSK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2843 277 Gene3D - 3 98 IPR015300 -
Tpr1g2843 277 SMART B3_2 9 97 IPR003340 GO:0003677
Tpr1g2843 277 SMART B3_2 165 261 IPR003340 GO:0003677
Tpr1g2843 277 Pfam B3 DNA binding domain 164 255 IPR003340 GO:0003677
Tpr1g2843 277 PANTHER B3 DOMAIN-CONTAINING 6 260 - -
Tpr1g2843 277 CDD B3_DNA 163 259 IPR003340 GO:0003677
Tpr1g2843 277 ProSiteProfiles B3 DNA-binding domain profile. 164 261 IPR003340 GO:0003677
Tpr1g2843 277 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 260 - -
Tpr1g2843 277 CDD B3_DNA 13 94 IPR003340 GO:0003677
Tpr1g2843 277 SUPERFAMILY DNA-binding pseudobarrel domain 159 260 IPR015300 -
Tpr1g2843 277 Gene3D - 138 263 IPR015300 -
Tpr1g2843 277 SUPERFAMILY DNA-binding pseudobarrel domain 18 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2843 Tpr-Chr1 32802351 32804076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2843 19 277 REM Transcription Factor Family AT4G31640 22.348 7.54e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2843 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2843 - - mtr:MTR_1g035640 282.337