Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2842 ATGCAAAACCATGAAGAGGAGCTGAGGATTCCCAAGAATTTTGTCGACAAATATTGGAAAGGGATATCAAATCCAGTAGTCCTTAGCCTCCCAAATGGTGCTCAACAGAAAATATTTTGGGTGAAGTGTGGTGGTAATATTTGGTTTCAAAAGAATTGGGAAAAATTTGCAAAGTTTTTAAAAGTTGGATATGCTGTAGTTTTTAAATATATAGGAGGATCATATTTTAAGGTCAAGATATTTGGTGTCAATACATTGGAAATTGACTATTCAAATATAAAATTCATAGAAGATGAAATTTGTGAAGGTAGAGAAGTTGTTGAAGTGAATGATGATAGTGATAAGAGTCATGAAATATTTGTTGAAGTGAGTGATGAAAGTGACACACCTACACAAACTCAAAGGACAAAAAATGGCAAGAGGAAAATGAATGTAGATTTTGATGCAACCCAGCAAAAAATCTTATGTACCAACAAAGGAGACATGGTTAAGAAGGCTAAAGACAGGCCATTAACCGAAACTGTCAATGAGAGAGCCAACAGGGAGAATCCATGGTTTCAACTTAAATTGTCACCATGTTATGCCCATGGTACTTTCATGAAAATACCAAGTGAGTTTTCAAGGGAATACTTGAACAAATTTAAAGGAACTGCAACCATAAGTGTTGGTAGGGATGTGGCTATGAAAGTGAAGATGAAGTTTGATAATATTTATAGAAGATCTATTATAACTACTGGTTGGAATTTATTTAACCAAAGATATAACTTGCAAGCTAATGATATATGCTACTTTGAGATGACTCAACTCCAACCACCTTCATTCTCTATTACTATTTTTCGAGCAATAGAGAACTCAAGCCCTAAGAAGTTGCAAGGTTACAAAAAAGGAATATTTTCTTGTGATAATAATAGTGCAAAGGGAAAGGGCAATGTTGAAGGAACTTCTAGGAGCTCTCAAAAAATACATGTTCTCGAGAATTCAGAAGATCATAATGTGGTGAAACCTAAGACATTCAAGCTTCTTGTGAATGACTCATACCCGAACATACCAAATGAGTTTTTTAATAGACATATTGATTGTCATGGAAAATTTGTGGAGATTAAAGTGGATGAAAAGTCATGGTTTGTAAAAGTGAACTATTATCCAAGAGGTAGTAGATTTTGTTCAGGTTGGAGAAAATTTATGGAAGATTGCAAATTGGAGAATGGAGACACTTGTGTCTTTGAGTTGATTGATGACAAAAAATTTGTGTTTGTAGTTTCAATTGTAAGAAAGAAAGAGAAGCCAAGTGGTATTTGA 1299 0.3403 MQNHEEELRIPKNFVDKYWKGISNPVVLSLPNGAQQKIFWVKCGGNIWFQKNWEKFAKFLKVGYAVVFKYIGGSYFKVKIFGVNTLEIDYSNIKFIEDEICEGREVVEVNDDSDKSHEIFVEVSDESDTPTQTQRTKNGKRKMNVDFDATQQKILCTNKGDMVKKAKDRPLTETVNERANRENPWFQLKLSPCYAHGTFMKIPSEFSREYLNKFKGTATISVGRDVAMKVKMKFDNIYRRSIITTGWNLFNQRYNLQANDICYFEMTQLQPPSFSITIFRAIENSSPKKLQGYKKGIFSCDNNSAKGKGNVEGTSRSSQKIHVLENSEDHNVVKPKTFKLLVNDSYPNIPNEFFNRHIDCHGKFVEIKVDEKSWFVKVNYYPRGSRFCSGWRKFMEDCKLENGDTCVFELIDDKKFVFVVSIVRKKEKPSGI* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2842 432 PANTHER B3 DOMAIN-CONTAINING 4 281 - -
Tpr1g2842 432 PANTHER B3 DOMAIN-CONTAINING 308 425 - -
Tpr1g2842 432 CDD B3_DNA 186 280 IPR003340 GO:0003677
Tpr1g2842 432 ProSiteProfiles B3 DNA-binding domain profile. 332 426 IPR003340 GO:0003677
Tpr1g2842 432 CDD B3_DNA 335 424 IPR003340 GO:0003677
Tpr1g2842 432 Gene3D - 315 428 IPR015300 -
Tpr1g2842 432 Gene3D - 164 284 IPR015300 -
Tpr1g2842 432 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 281 - -
Tpr1g2842 432 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 308 425 - -
Tpr1g2842 432 Pfam B3 DNA binding domain 194 280 IPR003340 GO:0003677
Tpr1g2842 432 Pfam B3 DNA binding domain 349 425 IPR003340 GO:0003677
Tpr1g2842 432 CDD B3_DNA 8 81 IPR003340 GO:0003677
Tpr1g2842 432 ProSiteProfiles B3 DNA-binding domain profile. 185 282 IPR003340 GO:0003677
Tpr1g2842 432 SUPERFAMILY DNA-binding pseudobarrel domain 6 84 IPR015300 -
Tpr1g2842 432 SUPERFAMILY DNA-binding pseudobarrel domain 343 425 IPR015300 -
Tpr1g2842 432 SUPERFAMILY DNA-binding pseudobarrel domain 180 280 IPR015300 -
Tpr1g2842 432 SMART B3_2 337 426 IPR003340 GO:0003677
Tpr1g2842 432 SMART B3_2 186 282 IPR003340 GO:0003677
Tpr1g2842 432 SMART B3_2 1 84 IPR003340 GO:0003677
Tpr1g2842 432 Gene3D - 1 85 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2842 Tpr-Chr1 32795005 32799134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2842 349 424 B3 DNA Binding Superfamily AT3G18990 31.579 1.73e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2842 B3 1.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2842 - - mtr:MTR_1g035620 407.527