LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g2829	ATGTCTGAATCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATTATTGCTCAAATATTAACTTATCCACTTCAAGCTGTTAATACACGCCAACAAACTGAGAGAACACTTAAGAAGAACAAGCAAAGTTTGCTTCCTCAATCTTCCAACACAACAACCACTGATTCTTCTTCTTCTCCTGGTTTTTTTGTTCAGATATTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTTTATAGTGGCCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGGATTTACTACTTCTTCTATCAAATTTTTAAGAACAAGGCTGTGGCTATTGCAGCAGCAAGGAAACTCAAAGGGCATGGAGATGGTACTGTTGGAATGTTTGGCTGGCTCGTTGTAGCTGCTATTGCAGGGTCCTTAAATGTTCTGTTCACAAACCCAATTTGGGTTCTGGTGACTCGAATGCAGACACATAATCAAGCAGAGAGAAAAATCATGGAGGAAAAGAAAGAATTATTAAGAAAGGCTGCTTCCGAAAGCATGTTAGCAGGTTCAACATTGGAAGACAGATTAGAAGAACTAAATTCTACAAAACCTAAACCATTTGGGACTATACATGCAGCTAATGAAGTATATAATGAAGCTGGTATAGTTGGATTTTGGAAAGGTGTCATCCCTGCTCTTATTATGGTATGCAATCCATCTATCCAGTTTATGATTTATGAGAGTTCATTAAAGCGTCTAAGGGCGAAACGCTCTGCTAAGAAGCAGGGAGACACAAGTATAACTGCTTTGGAGGTCTTTATCGTGGGAGCGATAGCAAAACTTGGAGCTACTGTCACAACATACCCTTTGCTGGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAACTCGTTAAGATACTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTATGAAGGATTGCCAGGTTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTATTATTCATGGTAAAGGAGGAGCTTGTTAAGGCTATCATGATTCTTGCAAATAAAAGCAAAAAAGTTGTATTAAATTTGAGTAGTTAA	1119	0.3923	MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKKNKQSLLPQSSNTTTTDSSSSPGFFVQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQIFKNKAVAIAAARKLKGHGDGTVGMFGWLVVAAIAGSLNVLFTNPIWVLVTRMQTHNQAERKIMEEKKELLRKAASESMLAGSTLEDRLEELNSTKPKPFGTIHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKRLRAKRSAKKQGDTSITALEVFIVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGSNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAIMILANKSKKVVLNLSS*	373

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g2829	372	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	127	249	IPR018108	-
	Tpr1g2829	372	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	4	109	IPR018108	-
	Tpr1g2829	372	MobiDBLite	consensus disorder prediction	38	59	-	-
	Tpr1g2829	372	Gene3D	Mitochondrial carrier domain	189	371	IPR023395	-
	Tpr1g2829	372	Gene3D	Mitochondrial carrier domain	1	188	IPR023395	-
	Tpr1g2829	372	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	4	364	IPR044712	GO:0006862\|GO:0055085
	Tpr1g2829	372	Pfam	Mitochondrial carrier protein	4	108	IPR018108	-
	Tpr1g2829	372	Pfam	Mitochondrial carrier protein	127	250	IPR018108	-
	Tpr1g2829	372	Pfam	Mitochondrial carrier protein	264	356	IPR018108	-
	Tpr1g2829	372	PANTHER	PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER	4	364	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g2829	Tpr-Chr1	32550291	32555525	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g2829	71	356	Chloroplast and Mitochondria Gene Families	AT2G47490	29.592	4.01e-26	105

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g2829	K13354		-	gmx:100777898	600.897

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