Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2829 ATGTCTGAATCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATTATTGCTCAAATATTAACTTATCCACTTCAAGCTGTTAATACACGCCAACAAACTGAGAGAACACTTAAGAAGAACAAGCAAAGTTTGCTTCCTCAATCTTCCAACACAACAACCACTGATTCTTCTTCTTCTCCTGGTTTTTTTGTTCAGATATTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTTTATAGTGGCCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGGATTTACTACTTCTTCTATCAAATTTTTAAGAACAAGGCTGTGGCTATTGCAGCAGCAAGGAAACTCAAAGGGCATGGAGATGGTACTGTTGGAATGTTTGGCTGGCTCGTTGTAGCTGCTATTGCAGGGTCCTTAAATGTTCTGTTCACAAACCCAATTTGGGTTCTGGTGACTCGAATGCAGACACATAATCAAGCAGAGAGAAAAATCATGGAGGAAAAGAAAGAATTATTAAGAAAGGCTGCTTCCGAAAGCATGTTAGCAGGTTCAACATTGGAAGACAGATTAGAAGAACTAAATTCTACAAAACCTAAACCATTTGGGACTATACATGCAGCTAATGAAGTATATAATGAAGCTGGTATAGTTGGATTTTGGAAAGGTGTCATCCCTGCTCTTATTATGGTATGCAATCCATCTATCCAGTTTATGATTTATGAGAGTTCATTAAAGCGTCTAAGGGCGAAACGCTCTGCTAAGAAGCAGGGAGACACAAGTATAACTGCTTTGGAGGTCTTTATCGTGGGAGCGATAGCAAAACTTGGAGCTACTGTCACAACATACCCTTTGCTGGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAACTCGTTAAGATACTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTATGAAGGATTGCCAGGTTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTATTATTCATGGTAAAGGAGGAGCTTGTTAAGGCTATCATGATTCTTGCAAATAAAAGCAAAAAAGTTGTATTAAATTTGAGTAGTTAA 1119 0.3923 MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKKNKQSLLPQSSNTTTTDSSSSPGFFVQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQIFKNKAVAIAAARKLKGHGDGTVGMFGWLVVAAIAGSLNVLFTNPIWVLVTRMQTHNQAERKIMEEKKELLRKAASESMLAGSTLEDRLEELNSTKPKPFGTIHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKRLRAKRSAKKQGDTSITALEVFIVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGSNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAIMILANKSKKVVLNLSS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2829 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 249 IPR018108 -
Tpr1g2829 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 109 IPR018108 -
Tpr1g2829 372 MobiDBLite consensus disorder prediction 38 59 - -
Tpr1g2829 372 Gene3D Mitochondrial carrier domain 189 371 IPR023395 -
Tpr1g2829 372 Gene3D Mitochondrial carrier domain 1 188 IPR023395 -
Tpr1g2829 372 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 4 364 IPR044712 GO:0006862|GO:0055085
Tpr1g2829 372 Pfam Mitochondrial carrier protein 4 108 IPR018108 -
Tpr1g2829 372 Pfam Mitochondrial carrier protein 127 250 IPR018108 -
Tpr1g2829 372 Pfam Mitochondrial carrier protein 264 356 IPR018108 -
Tpr1g2829 372 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 4 364 - -
Tpr1g2829 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 264 355 IPR018108 -
Tpr1g2829 372 SUPERFAMILY Mitochondrial carrier 5 351 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2829 Tpr-Chr1 32550291 32555525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2829 71 356 Chloroplast and Mitochondria Gene Families AT2G47490 29.592 4.01e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2829 K13354 - gmx:100777898 600.897