Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2823 ATGTCTGGATTACCGACCGATCCTGACTATTTAAACAAATCCGACAATGCATGGCAACTAGTCGCGGCCACATTTGTCGGTCTCCAAAGTGTTCCGGGACTAATAATATTATACGGCGGAGCGGTTAAAAAAAAATGGGCAGTGAATTCAGCATTCATGTCACTCTATGCATTTGCTTGTGTATTTCTTTGTTGGGTTATTTGGGCTTATAGATTATCATTTGGTGATCAACTTTTACCATTTTGGGGAAAACCAGCACTTGCACTTGATGAAGTTTATCTTTTCAAAAAAGCATTTTCAGGAAATTTTCCTAATGCTACTATGATTTATTTTCAAGGTGTTTTTGCTGCTATTACTTTGATTTTGATAGCTGGTGCTGTGTTGGGGAGAATGAATTTCTATGCTTGGATGTTGTTTGTGCCTTTATGGCTCACTTTTTCATATACTTTTACTGCTTTTAGTATTTGGAGTCCTAATGGCTTTTTGACTAAGTTGGGGATTATTGATTATTCTGGTGGTTATGTTATTCATTTGTCTTCTGGTGTTGCTGGTTTCACTGCTGCATATTGGGTTGGACCGCGTCTAAACAAAGACAGGGAAAGGTTTCCACCAAACAACCTCCTTCTCATGCTCGCCGGAGCAGGGCTTCTATGGATGGGATGGACAGGATTCAATGGAGGAGATCCGTACTCAGTTGGCATAGATGCTTCCTTGGCTGTCTTGAACACACATGCTTGTACTGCTACTAGCTTGCTTACTTGGGTTTTACTTGATGTCATCTTTTTCAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTGGTTTGCATTACCCCTGCTGCAGGAGTTGTACAAGGATGGGCAGCCCTTATAATGGGAGTCTGCTCTGGCTCAATTCCATGGTTCACTATGATGGTAATCCACAAGAGATCAAAGTTACTTCAAAAGGTAGATGACACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGTGGAATTCTCACTGGTCTCTTTGCTGAGCCAAACTTAAATGCATTATTCTATGGTGCTTATAATAAATATGTTGGTCTATTTTATGGATTACATATGAAAAAGGCTAGTCTTGGATTCAGACAAATTGGAATCCAATTAATTGGAATTTTGTTTGTTATCTTTGTTAATGTTGTAAGTACAAGTTTGATATGTCTCTTCATTCGTCTTTTCGTTCCATTGAGAATGTCCGAAGAGGATATGGAAATCGGCGACGAAGCTGCTCATGGTGAAGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAAAATTCAAGTTCAAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCCGTGACGACGAAGAACAAGCGCGGTAGCCAGATTGAGATGATGTAA 1419 0.3975 MSGLPTDPDYLNKSDNAWQLVAATFVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFLCWVIWAYRLSFGDQLLPFWGKPALALDEVYLFKKAFSGNFPNATMIYFQGVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLTKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGIDASLAVLNTHACTATSLLTWVLLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVCSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPNLNALFYGAYNKYVGLFYGLHMKKASLGFRQIGIQLIGILFVIFVNVVSTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDVEVAVTTKNKRGSQIEMM* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2823 472 PANTHER AMMONIUM TRANSPORTER 6 472 - -
Tpr1g2823 472 PANTHER AMMONIUM TRANSPORTER MEP2 6 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tpr1g2823 472 SUPERFAMILY Ammonium transporter 10 413 - -
Tpr1g2823 472 PRINTS Rhesus blood group protein signature 112 128 IPR002229 GO:0005887
Tpr1g2823 472 PRINTS Rhesus blood group protein signature 208 226 IPR002229 GO:0005887
Tpr1g2823 472 PRINTS Rhesus blood group protein signature 239 261 IPR002229 GO:0005887
Tpr1g2823 472 Gene3D Ammonium transporter AmtB like domains 5 435 IPR029020 -
Tpr1g2823 472 Pfam Ammonium Transporter Family 17 431 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr1g2823 472 ProSitePatterns Ammonium transporters signature. 169 194 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tpr1g2823 472 TIGRFAM amt: ammonium transporter 15 431 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2823 Tpr-Chr1 32451082 32454581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2823 106 458 Inorganic Solute Cotransporters AT2G38290 62.606 1.30e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2823 K03320 - gmx:100787856 815.068