Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2804 ATGGTTGATAAAAGTTCAATTACTCGCGAATCGAGTAAACTCGATTCGCCTGATTTAAATTGGACTAACATGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTGGTTTATTTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGTAAAATTGTTTCTCCAATTACTGCTACTAATCATGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTTAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAAGGGAATGAGAAGGATTTGATAACTTTTTCTAAGAGAGGAAGAAAATATACATATCATGAATTTAAAGCTATGGCAAACAAGGCGTTTTCGAATAAATTTTGCAGTTCAGAAGGTCTTTCTTCTTCGGATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAAGGTGCAGTAGAATATGGAGTCAACATTGAGGGAAGTGTATTTTCATGTGATCCTGATGATAAACTTGGAACAAGCAAATTCAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACGTTGCGTTTAGTTGACAGGGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTACGGTGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTGTTGAATCATGTGTATTGCAACAAAGCCTTGAAAGAACATGGAGAGAATGGTGCATTTCAATTTCTTGCACAAAAAACAAGCATGTTCCCTCCTAATGTCTTGTTACAACAAGATGTGCCGGTTTACAAGGCTGTGCAGAAGCCGGGAGAGTTTGTCATCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCGCTCGGGGCTGCAGCTAGCAAACGTTATGCATATCTCAGAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGATATATAAGTCTTCAAAAGTCATAAGTTTCAAGAACAAACCTGAAGACAAAGCATCTTATCATGCAATCGTACAATCTTTCTTGCAGCTTATGCAATTTTATAAGACATTGCTATCGCGGTTGAACAGTTCAAGAAATTTAACAACCTCTTCAAATACATTAGGTTCTGTAACATGCAGCATCTGCTATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGCAATGTTATTCCAATCCAATTTGCCTTTTCCATGACATTGTGCCGCAAACTTGCTTATGTGGGAGAAAATACACCGTTTTTAAGAGGAATGACTTGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAGCAGAACGATAATTGGCATGAAGGAAAAAGTGCTGGAACTTTTATCTCTATAGGGGCAGCGTCTAAACTGCAAAGAAGAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAAGACAAAGAATTATCGTAGAAACAATCCGCCTCCTTCTGGGATGAGTAACAAAAGACCACGAATCCTTTATAACTCGAGAAAACATGACTCAAAATTGATCATAAAAGTTCCTGCAATATCTTCTCTTTCGGCGACATCTGAAAAATCAAAGTAA 1713 0.3759 MVDKSSITRESSKLDSPDLNWTNMIPECPIYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPITATNHADYVLMKEKKDFKFETIVQPLRLSKGNEKDLITFSKRGRKYTYHEFKAMANKAFSNKFCSSEGLSSSDIEKAFWHEMIHGEKGAVEYGVNIEGSVFSCDPDDKLGTSKFNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLNHVYCNKALKEHGENGAFQFLAQKTSMFPPNVLLQQDVPVYKAVQKPGEFVITFPRSYHAGFSHGFNCGEAVNFAIGDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVISFKNKPEDKASYHAIVQSFLQLMQFYKTLLSRLNSSRNLTTSSNTLGSVTCSICYRDCYVAYLLCKQCYSNPICLFHDIVPQTCLCGRKYTVFKRNDLLELEHAAKSFQQNDNWHEGKSAGTFISIGAASKLQRRVADNIKHNVEKKTKNYRRNNPPPSGMSNKRPRILYNSRKHDSKLIIKVPAISSLSATSEKSK* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2804 570 Pfam C5HC2 zinc finger 424 476 IPR004198 -
Tpr1g2804 570 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 553 - -
Tpr1g2804 570 MobiDBLite consensus disorder prediction 518 539 - -
Tpr1g2804 570 Pfam JmjC domain, hydroxylase 205 328 IPR003347 -
Tpr1g2804 570 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Tpr1g2804 570 Pfam jmjN domain 29 61 IPR003349 -
Tpr1g2804 570 SUPERFAMILY Clavaminate synthase-like 185 364 - -
Tpr1g2804 570 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 9 553 - -
Tpr1g2804 570 ProSiteProfiles JmjC domain profile. 175 345 IPR003347 -
Tpr1g2804 570 Gene3D Cupin 28 391 - -
Tpr1g2804 570 SMART JmjN_1 27 68 IPR003349 -
Tpr1g2804 570 SMART cupin_9 175 345 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2804 Tpr-Chr1 32196577 32199748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2804 25 482 JUMONJI Transcription Factor Family AT2G34880 29.981 1.19e-58 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr1g2804 JmjC 2.4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2804 - - gmx:100809650 828.165