Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2802 ATGGGTCGTGGAAAGATTGAGATAAAGAGGATTCAAAACACAACAACAAGACAAGTTACATTTTCCAAAAGAAGAAGTGGACTCATCAAGAAAACTCATGAACTTTCAGTGTTATGTGAAGCTAAAATTGGGCTTATCATTTTTTCAAGTACTGGAAAACTCTTTCAATACTGCTCTGAACCCTATAGTATGGAGCAAATCATTGAAAAGTATGAAAGATCTAGTGGTAAACGAGTTATGGTGGAACAGGATGATCATCTGACTAATCACCACAGGGAAGAAATGCTGAATGAGATAGCAATGTTGAGGCAAGAAAGTCTTAGTATTGAATTGGGAATTCAACGCTATTTAGGAGTTGACATGAAAAATTTCAAGTTTGATGATCTGATAAAACTTGAAGAAGAATTAGAAAATTCTCTTGCAAAAGTTCGAAATCGGCAGATTGAGCTCTTCCAACAGCAAATCCAGAATCTGCGAATCAAGGAAAGAATTTTGGAAGAGGAAAACATCAATCTGTCCAACTGGTTTCAGCAGCACATGAGAGTGATGGAATTACACAACCTTGGAGTGGAAGGAAAAAAATCGGTACAAGAACAACAAAATGCAATGGATGAGTTTGCATTCTTTGAGGACCAACCTACAAGTAGCATTCTTCAACTTGCACTTGCTCAGCCAAATCTTCAAGACTATCACAAGTCTAGGGACCCAAATCAGCCATAA 720 0.3736 MGRGKIEIKRIQNTTTRQVTFSKRRSGLIKKTHELSVLCEAKIGLIIFSSTGKLFQYCSEPYSMEQIIEKYERSSGKRVMVEQDDHLTNHHREEMLNEIAMLRQESLSIELGIQRYLGVDMKNFKFDDLIKLEEELENSLAKVRNRQIELFQQQIQNLRIKERILEEENINLSNWFQQHMRVMELHNLGVEGKKSVQEQQNAMDEFAFFEDQPTSSILQLALAQPNLQDYHKSRDPNQP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2802 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g2802 239 PANTHER MADS BOX PROTEIN 1 226 - -
Tpr1g2802 239 Coils Coil 126 168 - -
Tpr1g2802 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 226 IPR031050 GO:0005634|GO:0048316
Tpr1g2802 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr1g2802 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tpr1g2802 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 Pfam K-box region 89 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g2802 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g2802 239 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Tpr1g2802 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2802 Tpr-Chr1 32183324 32186866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2802 1 229 MADS-box Gene Family AT5G23260 43.083 4.83e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr1g2802 K-box 4.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2802 - - gmx:102667157 263.848