Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2788 ATGAGCAATTTATATTTTCTTTACCTTTATCACAACTATCTCAGTGGTAGTATTCCTAGTGAAATCGGAAAGCTTTATTTCATTTCCACAATTCAGTTGTTATACAACAACCTCTCTGGTCTAATTCCATCTTCAATTGGAAACTTGGTCAATTTGAATTCTATTCTCCTTTCCTCAAATGCTCTCACTGGACAAATCCCACCTTCAATAGGTAACTTAGTCAATTTGAATACTATTGACTTTTCACAAAATAAACTCTTTGGATCAATTCCGTCCACTTTCGGAAATTTGACAAACCTTGCTATATTAGATCTTTTGTCAAATGATCTCAATGGAAATATTCCAATAGATATTAATAGACTTACCAGTTTGGAAATTTTGCAGTTAGGTGATAATAATTTCACAGGTCATTTACCTCACAATATATGTGTTAGTGGAAAGTTGACACACTTCTATGCTAGTCATAACCAATTAAAAGGTCCAATTCCAGAGAGTTTGAAGAATTGTTCAAGCCTTGTGAGAGTGAGACTTGACAAAAACCGACTTACTGGAAATATAACATATAGTTTTGGTGTTTATCCAAATTTGGAATACATGGATTTAAGTTATAATAACTTGTATGGCCATCTTTCTCCTAATTGGGGAAAGTGCAAGAATCTCACAAGTCTCAAAATCTCCAATAATAACTTAACAGGAAACATACCACCAGAACTAGGTAGAGCAACAAATTTACATGAACTTAACTTCTCCTCAAACCATCTTATGGGAAAAATTCCAAAGGAACTTGGAAACTTATCTTTGTTGATCAAACTCTCAATAAGTAACAATCATCTTTCGGGAGAAGTACCTGTACAAATTGCATCACTGCATGAACTAACTGTCTTGGAGTTTGCAACAAATAATTTAAGTGGATTCATCCCTGAAAAACTTGGAAGGTTGGTTATGTTATTGCAATTGAATTTGAGCCAAAATAAATTTGAAGGAAACATTCCTGTTGAGTTTGGTCAATTGAATGTTATAGAAAGTCTTGATCTTAGTGGGAATTTTTTGAATGGAACCATACCGGCAATGCTTGGACATTTAAATAGCTTAGAAACATTGAATCTCTCACATAATAATCTTACTGGCACCATTCCTGTGAGCTATGGTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCGGTTGGAAGGTCCGATTCCAAACATTCCAGCCTTTCAAAAAGCAAATATTGAAGAACTGAGAAACAACAAAGACCTGTGTGGTAATGTCGCTAGCCTAAAGCTTTGTCCAACATCTAGTGGTAACTCTCATAATCCAAAGACTAACAAAATTTTGGTACTAGTTTTACCCCTCACTCTAGGCACTGTACTGATAGCAATATTTGTTTATGGGTTCTCATATCATAAATGGCGAGCTTCAAGCACAAAAAACAATGTTGTTGAAGAATCACATGTTGAAAATCTATTTACAATATGGAGTTTTGACGGAAAAATGGTGTATCAGAACATCATTGATGCTACAGAAGAGTTTGACAACAAGCATCTCATAGGCGTAGGAGGACATGTAAGTGTTTACAAAGCAGAGTTGCTTACAGGACAAATTGTAGCTGTGAAGAAACACCATTCATTACAAAATGGAGCAATGCCGAATCTGAAAGCTTTTACAAGTGAGATCCAAGCTTTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGATATTGTTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTGGAGAAGGGTAGTGTGGACAACATTTTGAAAGATGATGAACTAGCAACTGCATTTGATTGGAAAATGAGGCTGAATGCCATTAAAGATGTTGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCTCCGATCGTTCATCATGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTGGCTCATGTCTCAGACTTCGGTACAGCTAAGTTTCTTAATCCCGATTCTTCCAACTGGACCTCTTTTGTGGGCACATTTGGATATGCTGCACCAGAACTTTCATACACAATGGAAGTAAATGAGAAGTGCGATGTGTATAGTTTTGGAGTATTAACTATGGAAATAGTTTTTGGAAAGCATCCCAGAGATATTGTATCTACTTTGTTGCAATCAAGTGGTATATACCAAACAATTGATGCTATGTCATTGAATGATAAGTTGGATCAACGCCTTCCTCGTCCTACGAATGCTATCAGGAAAGAAGTGGTATCAATTATCAGAATTGCATGTCATTGCTTAATTGAAAGCCCGCATGGTCGCCCATCAATGGAGCATGTTTGCAAGGAGATTGTAATGTCAAAATCATCTTCAAATATAGCAATGGGGTGA 2391 0.358 MSNLYFLYLYHNYLSGSIPSEIGKLYFISTIQLLYNNLSGLIPSSIGNLVNLNSILLSSNALTGQIPPSIGNLVNLNTIDFSQNKLFGSIPSTFGNLTNLAILDLLSNDLNGNIPIDINRLTSLEILQLGDNNFTGHLPHNICVSGKLTHFYASHNQLKGPIPESLKNCSSLVRVRLDKNRLTGNITYSFGVYPNLEYMDLSYNNLYGHLSPNWGKCKNLTSLKISNNNLTGNIPPELGRATNLHELNFSSNHLMGKIPKELGNLSLLIKLSISNNHLSGEVPVQIASLHELTVLEFATNNLSGFIPEKLGRLVMLLQLNLSQNKFEGNIPVEFGQLNVIESLDLSGNFLNGTIPAMLGHLNSLETLNLSHNNLTGTIPVSYGEMLSLTTVDISYNRLEGPIPNIPAFQKANIEELRNNKDLCGNVASLKLCPTSSGNSHNPKTNKILVLVLPLTLGTVLIAIFVYGFSYHKWRASSTKNNVVEESHVENLFTIWSFDGKMVYQNIIDATEEFDNKHLIGVGGHVSVYKAELLTGQIVAVKKHHSLQNGAMPNLKAFTSEIQALTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDNILKDDELATAFDWKMRLNAIKDVANALCYMHHDCSPPIVHHDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELSYTMEVNEKCDVYSFGVLTMEIVFGKHPRDIVSTLLQSSGIYQTIDAMSLNDKLDQRLPRPTNAIRKEVVSIIRIACHCLIESPHGRPSMEHVCKEIVMSKSSSNIAMG* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2788 796 Gene3D Transferase(Phosphotransferase) domain 1 592 794 - -
Tpr1g2788 796 SUPERFAMILY L domain-like 2 236 - -
Tpr1g2788 796 ProSiteProfiles Leucine-rich repeat profile. 363 385 IPR001611 GO:0005515
Tpr1g2788 796 Gene3D Ribonuclease Inhibitor 127 435 IPR032675 -
Tpr1g2788 796 Gene3D Ribonuclease Inhibitor 1 122 IPR032675 -
Tpr1g2788 796 ProSitePatterns Tyrosine protein kinases specific active-site signature. 637 649 IPR008266 GO:0004672|GO:0006468
Tpr1g2788 796 PRINTS Leucine-rich repeat signature 340 353 - -
Tpr1g2788 796 PRINTS Leucine-rich repeat signature 361 374 - -
Tpr1g2788 796 Pfam Leucine rich repeat 341 398 IPR001611 GO:0005515
Tpr1g2788 796 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Tpr1g2788 796 Gene3D Phosphorylase Kinase; domain 1 473 591 - -
Tpr1g2788 796 SMART LRR_typ_2 49 73 IPR003591 -
Tpr1g2788 796 SMART LRR_typ_2 361 385 IPR003591 -
Tpr1g2788 796 SMART LRR_typ_2 289 313 IPR003591 -
Tpr1g2788 796 SMART LRR_typ_2 217 241 IPR003591 -
Tpr1g2788 796 SMART LRR_typ_2 121 145 IPR003591 -
Tpr1g2788 796 SMART LRR_typ_2 1 25 IPR003591 -
Tpr1g2788 796 SUPERFAMILY Protein kinase-like (PK-like) 494 783 IPR011009 -
Tpr1g2788 796 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 790 - -
Tpr1g2788 796 SUPERFAMILY L domain-like 168 424 - -
Tpr1g2788 796 ProSiteProfiles Protein kinase domain profile. 513 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2788 796 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 790 - -
Tpr1g2788 796 Pfam Protein kinase domain 514 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2788 Tpr-Chr1 32058339 32061028 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2788 1 685 Receptor kinase-like Gene Family AT4G08850 44.718 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g2788 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2788 - - mtr:MTR_0365s0020 1093.95