Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2780 ATGGCTGGAATAAGAGAACAAGACCAATACATGCCAATAGCAAATGTGATTCGAATAATGCGAAGAATCCTTCCGCCACACGCAAAAATCTCTGATGACGCAAAAGAAACAATTCAAGAATGTGTTTCGGAGTACATAAGCTTCATAACTTCCGAAGCAAACGAGCGTTGCCAGAAAGAACAAAGGAAAACAGTTACAGCAGAAGATATACTTTGGGCTATGGGGAAACTTGGTTTTGATGATTATGTTAATCCTTTAGCATTTTACCTTCAACGTTACCGTGAAAGTGAAGGCGAACCCGCTTCTGTTCGACGCACTTCTTCTCATGATGTTCCTCATCCTCCTCCTCTTCCTCTTTCAATGCTGCAGCAGCAGCAGCTTCCATTTTTATCGGCTATGCCGGTTTCGAGTATTGATGGTAATAATAACTGTTATGGTTTTGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGTTGGTGGTGGTGGTGATGCTTCTTCTTCTGCTGCTTTTGTACCGAATTTTGATAATTGTTTTCCTCATCTCAAACGTGATAATAGTAACATGTGA 579 0.4024 MAGIREQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFITSEANERCQKEQRKTVTAEDILWAMGKLGFDDYVNPLAFYLQRYRESEGEPASVRRTSSHDVPHPPPLPLSMLQQQQLPFLSAMPVSSIDGNNNCYGFGYGFDFDQGFYRDGVGGGGDASSSAAFVPNFDNCFPHLKRDNSNM* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2780 192 Gene3D Histone, subunit A 2 127 IPR009072 GO:0046982
Tpr1g2780 192 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Tpr1g2780 192 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Tpr1g2780 192 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Tpr1g2780 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Tpr1g2780 192 SUPERFAMILY Histone-fold 7 106 IPR009072 GO:0046982
Tpr1g2780 192 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr1g2780 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 128 - -
Tpr1g2780 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2780 Tpr-Chr1 31971215 31971818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2780 5 127 CCAAT-HAP3 Transcription Factor Family AT1G21970 64.539 4.12e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr1g2780 CBFD_NFYB_HMF 3.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2780 K08065 - gmx:547959 199.134