Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2776 ATGAGGCATTTACCATGTCTTCTTGTGCTCTTTTGTTTGTTTGTAATGGCCACATCAGCTCATGCAACAACAAATATCCAAGGCAGTGGGGTTGATGCTCTGTTGAAGTGGAAATCAAGCCTTGAAAACAATAGCAAAACTTTGCTTTCTTCATGGAATATTGGTAATAATCCTTGTAGTTGGGAAGGAATAACATGTGATGATGAGTCAAAATCTATCTCCAAAATAAATCTCACCAATATTGGACTAAAAGGTATGCTACACAATTTCAATTTCTCATCACTTCCGAAAATTCGCACCTTAATTTTAAGAAACAACTTATTTTATGGAGTTGTTCCACAAAATATTGGAGTGATGTTCAATCTAAACACTCTTGATTTATCTACCAATAAACTCTCTGGACCAATTCCTACTACTATTGGAAATTTGACAAAACTTAAGACATTATCTCTTTTCTCAAATGATCTCAGTGGAAATATTCCAACAGAAATGAATAAGCTTACCAATTTGGAAACTCTACAGTTGGCTTATAATAATTTCATAGGTCCCTTACCTCACAACATTTGTTTTGGTGGAAAGTTAGTTAAGTTATCCGCTAGCAATAACCAATTCACCGGTCCAATTCCGGAGAGTTTGAAGAATTGCTCAAGCCTTGTAAGAGTTAGGCTTCAACAAAACAATCTAACCGACAATTTAGCCGATAGTTTTGGTGTGTATCCAAATTTAGACTACATGGAATTGAGTGATAATAATTTTTATGGCCATCTTTCTCCAAACTGGGGAAAATGCAGGAATCTCACGAGCCTAAAAATCTCGAACAATAACTTAACAGGAAGTATACCCCCAGAATTGGCTAAGGCAACTAAATTACATATACTTGACTTGTCTTCGAACCAAATTACCGGAAAAATTCCAATGGAGCTAGGCAAATTATCTTCATTGATCCAACTATCAATAAGTGGTAATAATCTTTCAGGAGAAATTCCTATACAAATTTCATCATTGCAAGAACTAGTTACCTTGGAGCTTTCAACAAATAATTTAAGTGGTTCCATCCCAAAACAACTTGGAAGGTTGCCAATGTTATTGGACTTGAATTTGAGCCAAAATAAGTTTGAAGGGAGCATTCCAAATGAGATTGGCCAATTAAATGTTATTCAAAATCTTGATCTTAGTATGAATTTTTTTGATGGAACCATACCATCAATGCTTGCACAGTTGAAATACTTAGAAACATTGAATCTCTCGCATAATAATCTTTCTGGTACGATTCCCGTGAGCTATAACGAGATGTTAAGTTTGACAACTGTTGATATATCATACAACCAATTGGAGGGTCCGATTCCAAACATTCCGGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATGTCTCCGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCATAGTCATAAGACTAACAAAATTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTCTATTGTTAGCATTATTTGTTTATGGGCTCTCATACATTTTATTCCAAACTTTAAGAACAAAAGAACATAAGCATGCAGAAGAAATTCAAACTGAAAATCTATTTGCAATATGGAGCTTTGATGGCCAAATGGTGTATGAAAACATTATCGAAGCCACGGAACAATTTGACAAAAAACATCTCATTGGGGTAGGAGGGCAAGGAAGTGTTTACAAAGCAGAGTTGTCTACAGGACAAGTTATAGCTGTGAAGAAACTCCATTTATTACATAATGGAGAATTGTCGAATATTAAAGCTTTTGCAAGTGAGATCCAAACTTTAACAGAAATCAGACATCGAAACATTGTGAAGTTATATGGATATTGTTCACATCCATTGCACTCATTTTTGGTTTATGAGTTCTTGGAGAAGGGTAGTGTCGACAACATTTTGAAAGACGATGAAAAAGTAGCCACATTTGATTGGAATAAGAGGGTGAATGCCATTAAAGATGTAGCAAATGCTTTATGCTATATGCATCATGATTGCTCGCCTTCAATTGTTCATCGTGATATATCCAGCAAGAATGTTGTTTTGGATTCCGAATATGTGGCTCATGTCTCAGACTTCGGTACAGCTAAGTTTCTTAATCCAGATTCTTCTAACTGGACCTCTTTTGTAGGCACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGAAAGTAAATGAAAAGTGTGATGTGTATAGTTTTGGAGTGTTAACCATGGAAATACTTTTTGGAAAGCATCCCGGAGATATTGTATCGACTTTGTTGCAATCAAGTGGTATATACCTAACAATTGATGCTATGTCTTTGATCGATAAGTTGGATCAACGCCTCCCTCATCCTACGAATGATATCCGGAAAGAAGTGGTATCAATTATTAGGATTGCTACTCATTGCTTAAATGAGAGCTCACATAGTCGCCCTACAATGAAGCAAGTTTGCAAGGAGATGAAAATGTCAAAGTAA 2508 0.3604 MRHLPCLLVLFCLFVMATSAHATTNIQGSGVDALLKWKSSLENNSKTLLSSWNIGNNPCSWEGITCDDESKSISKINLTNIGLKGMLHNFNFSSLPKIRTLILRNNLFYGVVPQNIGVMFNLNTLDLSTNKLSGPIPTTIGNLTKLKTLSLFSNDLSGNIPTEMNKLTNLETLQLAYNNFIGPLPHNICFGGKLVKLSASNNQFTGPIPESLKNCSSLVRVRLQQNNLTDNLADSFGVYPNLDYMELSDNNFYGHLSPNWGKCRNLTSLKISNNNLTGSIPPELAKATKLHILDLSSNQITGKIPMELGKLSSLIQLSISGNNLSGEIPIQISSLQELVTLELSTNNLSGSIPKQLGRLPMLLDLNLSQNKFEGSIPNEIGQLNVIQNLDLSMNFFDGTIPSMLAQLKYLETLNLSHNNLSGTIPVSYNEMLSLTTVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNVSGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYGLSYILFQTLRTKEHKHAEEIQTENLFAIWSFDGQMVYENIIEATEQFDKKHLIGVGGQGSVYKAELSTGQVIAVKKLHLLHNGELSNIKAFASEIQTLTEIRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDNILKDDEKVATFDWNKRVNAIKDVANALCYMHHDCSPSIVHRDISSKNVVLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMKVNEKCDVYSFGVLTMEILFGKHPGDIVSTLLQSSGIYLTIDAMSLIDKLDQRLPHPTNDIRKEVVSIIRIATHCLNESSHSRPTMKQVCKEMKMSK* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2776 835 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 99 834 - -
Tpr1g2776 835 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 130 - -
Tpr1g2776 835 Pfam Protein kinase domain 561 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2776 835 Gene3D Ribonuclease Inhibitor 190 484 IPR032675 -
Tpr1g2776 835 ProSiteProfiles Protein kinase domain profile. 560 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2776 835 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 130 - -
Tpr1g2776 835 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 99 834 - -
Tpr1g2776 835 ProSiteProfiles Leucine-rich repeat profile. 289 312 IPR001611 GO:0005515
Tpr1g2776 835 Pfam Leucine Rich repeat 408 422 IPR001611 GO:0005515
Tpr1g2776 835 Pfam Leucine rich repeat 264 324 IPR001611 GO:0005515
Tpr1g2776 835 Gene3D Transferase(Phosphotransferase) domain 1 639 835 - -
Tpr1g2776 835 Gene3D Phosphorylase Kinase; domain 1 520 638 - -
Tpr1g2776 835 PRINTS Leucine-rich repeat signature 122 135 - -
Tpr1g2776 835 PRINTS Leucine-rich repeat signature 407 420 - -
Tpr1g2776 835 SUPERFAMILY RNI-like 136 449 - -
Tpr1g2776 835 Gene3D Ribonuclease Inhibitor 140 189 IPR032675 -
Tpr1g2776 835 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Tpr1g2776 835 SUPERFAMILY L domain-like 70 161 - -
Tpr1g2776 835 ProSitePatterns Tyrosine protein kinases specific active-site signature. 684 696 IPR008266 GO:0004672|GO:0006468
Tpr1g2776 835 SUPERFAMILY Protein kinase-like (PK-like) 543 830 IPR011009 -
Tpr1g2776 835 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2776 Tpr-Chr1 31933537 31936507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2776 93 732 Receptor kinase-like Gene Family AT4G08850 46.379 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g2776 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2776 - - mtr:MTR_0365s0020 1229.93