Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2733 ATGGAATTCAAAGCAACTGAGCTTAGATTGGGATTACCAGGAACAGAGGAAAAGGAGAACAAAATAATGAATCTTAGTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATCAACAAGTTGAGAGTTCTTCTGCTGCCCCTCCTTCCAAGGCAAAGATAGTTGGGTGGCCACCAATTAGATCTTACAGGAAAAATAGCTTGCAAGAGGCTGAAGTTGGTGGGATCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTAAGGATCTATGGAGGGTACCCTGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGCTACTTCTTGCAAAAGGCTAAGAATCATGAAAGGAGCAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 555 0.4 MEFKATELRLGLPGTEEKENKIMNLSVKNNKRQLPQTSEESVSISKVSNDQQVESSSAAPPSKAKIVGWPPIRSYRKNSLQEAEVGGIFVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFATSCKRLRIMKGAEARGLGCGV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2733 184 ProSiteProfiles PB1 domain profile. 87 174 IPR000270 GO:0005515
Tpr1g2733 184 SUPERFAMILY CAD & PB1 domains 78 173 - -
Tpr1g2733 184 Pfam AUX/IAA family 6 181 IPR033389 -
Tpr1g2733 184 MobiDBLite consensus disorder prediction 26 59 - -
Tpr1g2733 184 Gene3D - 81 184 - -
Tpr1g2733 184 MobiDBLite consensus disorder prediction 21 63 - -
Tpr1g2733 184 PANTHER AUXIN-INDUCED PROTEIN 1 181 - -
Tpr1g2733 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 181 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2733 Tpr-Chr1 31450165 31451851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2733 90 180 B3 DNA Binding Superfamily AT2G46530 37.363 1.09e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g2733 AUX_IAA 3.4e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2733 K14484 - gmx:100800212 300.056