Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2728 ATGGCTAGTAGTAGCAACCAAAGTGTCTCTTCATCTAGGAAGATGACATGGAAATATCATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGCAACAATTTCACTGATCACCTTTTTGGTGCTTTTCATAGAAAAGGCATTTTTGCCTTCAAGGATGATATAAAGCTCAAGAAAGGGGAAGATATATCATCTGACCTTCGAAAAGCCATTGAAGGGTCTCAAATTTTGATTGTTATTTTCTCAAGAAACTATGCTTCTTCCACATGGTGTTTGCGGGAACTAGAAAAAATTGCTGAATGCAAAGTATTAGGACAACCTGTGCTACCTATCTTCTATGACGTGAGTCCATCTGAGGTACGAAAGCAAAGCGGGAATTTTGAAAAAGCCTTTATGGAGCATGAAGATAGATTCAAAGAAAACTTAGAGGAAGTGCAAAGATGGAGGAGAGCTCTAACACAAGTAGCCAATCTCTCTGGTTTTGATTTAACGGATAAGCCACAATATGCAGAGATTGAAAAAATTATTAAAGAGGTAACAAGCTTATTGGGTCACAAATTTTCAACATTACCTGACGATATAGTTGGGATGCACTCACAAGTGGAAAAATTAGAAAACCTGATGATGTTGGACTCCGATGATAATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACTCTTGGTAATGCTTTGTATGGTAGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGATGATGTAAGTAAAACTTATGGAGGTGATGGCCCAGTTGGAGTGCAAAAGCAACTTCTTTGTCAAACTCTAAAAGAAGAAAATCTTCAGATATCCAATCATTATATGGCATCTAATTTGATTCGAACTAGGCTATGTCAAGTAAAATCCCTTGTAATCCTTGATAATGTTGATAAAGTTGAACAACTGGATAAACTAGCCATGAAACGAGAGCGGCTAGGCACTGGGAGCAGAATCATAGTAATTTCTAGAGATTGTCATATCTTGAGACAGCATGGAGTAGATGAAGTTTATCAAGTTGAACTCTTGGATCATAGTAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGACCGGTTACACAGACTTGACAAATGATGTACTAAGATATGCCAGAGGCCTTCCATTAGCAATTAAAGTGTTGGGCTCATTTTTGTATGGTCGAGAGGTCTCTGAATGGAGATGTGCATTGGAAAGATTAAGAGAGAATCCAATGGCAGGTATTATGGATGTACTCCGAATTAGTTATGATGGGCTAGACAATACAGAAAAGGGTATATTTCTTGATATTGCTTGTTTCTTTGATGGACATGAGGAGACATATGTGAAGAAATTTTTAGATATTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCCATGATAAGTCATTCATTACTTTTCAGTATGGGCATATTTTTATGCATGATTTATTCGAAGAACTTGGCAAGAGTATCGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAATAGATTGTGGGACTACAAGGATGTCCACAAAGTTATGTCAGAAAACATGGAATCAGAAAACCTTGAAGCCATAGTTCTGGAGCGTTATTTTTCTGAAATTGATGAAATACAAGCAATGTCAACATTGAGGGCAGAAAGTTTAGCAAAAATGAATCGCCTTAAATTGCTCATGCTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTGTCTTTCAAGTGAATTGGGGTATCTATGTTGGGATAAATATCCTTTCACTTGTTTGCCATCGAGTTTTGAGCCAGATAAACTTGTTGAACTGATCCTACCTCGTAGCAACATCAGGCAACTATGGTTGAGCACAAAGCCTCTTCATAATTTGACACGTCTTGATCTCTCTCACTCGAAAAATCTTATTATGATGCCAAGTTTTTTGGAGATTCCAAATCTTGAAATCCTAGATCTTGAAGGATGCATAAAACTTGTGCAGATTGATCCATCCATTGGTACCTTGAGAAGGCTTTCCAGATTAAATTTGAAAAATTGTACAAATCTTGTTAGTATTCCTAACAAAATTTTTGGTCTGAGTTCCCTTAAATATCTAAATCTCTCAGGCTGCCCAAATTTTTGGTTAGAGGGACAAAGAAAAATAGAACATTTGGGGATGCTTGAAAACAATGAAATTACTACCCAATACCAACCAACATCCTTCATCGACAAAGTTTTGAAGTCACCCTTCCGATTTTTTATTTTTCAAAAAAGTAGAGATCCAATTGGTTTATTGTTACCTTTGGTGTCTCTTTTGTCATGTTTACAACATCTAGACCTAAGTTTCTGCAATCTTCCTCAAATCCCTAATGCTATTGGGTGGTTACACTGCTTAGAAACACTAAATTTGAGGGGTAACAATTTTGTTACATTACCTTCCATCAAGGAACTTTTCAAACTTATAGAATTGAACTTGGACCATTGTAACCAGCTGAAATATTTATCTGAGCTCCCATCAAAAACTGTCTTGCCAGTAAGAAAAACATATTATGTTACCGTTGTATTAAATATTTTTGGTTGCCCCAGTTTAACTGACATAGAATGTTGTTATAGAACAGTTTTTCCTTGGATGATACAACTCCTTCAGGCGTACATGAAATCCGATCTCCCAATTGATGAGATTGATATTGTCATTCCTAGAATGCAAATTCCAATGTGGTTCAATAAACAAAATGTGGGCAGTTCAATAAGCATGGGACCATTACCCAATATGGATGAAAAGAATTTCATAGGTGTTTCTTTTGCTTGCTGCATAACACTTGTAGCACATGATGATCCAACTAGTTTAGGTTATGAAATGTCATCTATTGGTATTGGGTTCGGTATTAAAGTTAAAGAAAGTTTGTGGAGGAATTACAATATTTACATACATCATGGAAAAGATCCGGTTACAGCACTTAATTTACCACACCTGTGTCTAATTTTTATCACTAGGAAACAACTTACTTATCTTACAAGGCGATTGCATGATATTATTGAATTGGAAGTTTCTGTTGACTGTCCCGATGGTTTGCATTTTTTTGAGGTAAAAAATTGTGGTTATCGTTGGATATTTCAGGAGGATATAGAGCAATTAACCTCACAAATGTATTTAACAAATCATTAG 3171 0.3617 MASSSNQSVSSSRKMTWKYHVFVSFRGEDTRNNFTDHLFGAFHRKGIFAFKDDIKLKKGEDISSDLRKAIEGSQILIVIFSRNYASSTWCLRELEKIAECKVLGQPVLPIFYDVSPSEVRKQSGNFEKAFMEHEDRFKENLEEVQRWRRALTQVANLSGFDLTDKPQYAEIEKIIKEVTSLLGHKFSTLPDDIVGMHSQVEKLENLMMLDSDDNVRVVGICGMGGIGKTTLGNALYGRISNQFEACCYIDDVSKTYGGDGPVGVQKQLLCQTLKEENLQISNHYMASNLIRTRLCQVKSLVILDNVDKVEQLDKLAMKRERLGTGSRIIVISRDCHILRQHGVDEVYQVELLDHSNALQLFCRKAFKSDDIMTGYTDLTNDVLRYARGLPLAIKVLGSFLYGREVSEWRCALERLRENPMAGIMDVLRISYDGLDNTEKGIFLDIACFFDGHEETYVKKFLDIRGFHPEIGLRVLHDKSFITFQYGHIFMHDLFEELGKSIVREKSPKEPRKWNRLWDYKDVHKVMSENMESENLEAIVLERYFSEIDEIQAMSTLRAESLAKMNRLKLLMLWNLNFSGSLNCLSSELGYLCWDKYPFTCLPSSFEPDKLVELILPRSNIRQLWLSTKPLHNLTRLDLSHSKNLIMMPSFLEIPNLEILDLEGCIKLVQIDPSIGTLRRLSRLNLKNCTNLVSIPNKIFGLSSLKYLNLSGCPNFWLEGQRKIEHLGMLENNEITTQYQPTSFIDKVLKSPFRFFIFQKSRDPIGLLLPLVSLLSCLQHLDLSFCNLPQIPNAIGWLHCLETLNLRGNNFVTLPSIKELFKLIELNLDHCNQLKYLSELPSKTVLPVRKTYYVTVVLNIFGCPSLTDIECCYRTVFPWMIQLLQAYMKSDLPIDEIDIVIPRMQIPMWFNKQNVGSSISMGPLPNMDEKNFIGVSFACCITLVAHDDPTSLGYEMSSIGIGFGIKVKESLWRNYNIYIHHGKDPVTALNLPHLCLIFITRKQLTYLTRRLHDIIELEVSVDCPDGLHFFEVKNCGYRWIFQEDIEQLTSQMYLTNH* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2728 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Tpr1g2728 1056 SUPERFAMILY L domain-like 556 870 - -
Tpr1g2728 1056 SMART till_3 18 157 IPR000157 GO:0007165
Tpr1g2728 1056 Pfam C-JID domain 901 1045 IPR045344 -
Tpr1g2728 1056 Gene3D - 181 348 IPR027417 -
Tpr1g2728 1056 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 856 IPR044974 GO:0006952
Tpr1g2728 1056 ProSiteProfiles TIR domain profile. 17 182 IPR000157 GO:0007165
Tpr1g2728 1056 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Tpr1g2728 1056 Gene3D - 15 180 IPR035897 -
Tpr1g2728 1056 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Tpr1g2728 1056 Gene3D - 351 435 IPR042197 -
Tpr1g2728 1056 SMART LRR_typ_2 677 701 IPR003591 -
Tpr1g2728 1056 SMART LRR_typ_2 797 822 IPR003591 -
Tpr1g2728 1056 SMART LRR_typ_2 774 796 IPR003591 -
Tpr1g2728 1056 Gene3D Ribonuclease Inhibitor 753 875 IPR032675 -
Tpr1g2728 1056 PRINTS Disease resistance protein signature 217 232 - -
Tpr1g2728 1056 PRINTS Disease resistance protein signature 293 307 - -
Tpr1g2728 1056 PRINTS Disease resistance protein signature 386 400 - -
Tpr1g2728 1056 PRINTS Disease resistance protein signature 628 644 - -
Tpr1g2728 1056 SUPERFAMILY "Winged helix" DNA-binding domain 423 526 IPR036390 -
Tpr1g2728 1056 Pfam TIR domain 18 178 IPR000157 GO:0007165
Tpr1g2728 1056 ProSiteProfiles Leucine-rich repeat profile. 799 820 IPR001611 GO:0005515
Tpr1g2728 1056 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 856 - -
Tpr1g2728 1056 Gene3D Ribonuclease Inhibitor 511 748 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2728 Tpr-Chr1 31393756 31397704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2728 19 825 WRKY Transcription Factor Family AT4G12020 30.036 4.10e-82 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2728 - - mtr:MTR_4g080777 1474.91