Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2723 ATGGTTGGAATGGAACTCATACCGATAGGTACAATTTTGGCTGTTCTAACCAGCCAGGTTATCAAAACAGCGAATGCAGCAATCGATGTTCTTGTCGAAAAAGAAAGTTTTAATGTCCTTTCAAAACACCTTCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCACAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAAAAAGCAAGTAATTTGGTCGATAAGTATAGAAACCGCGGCCGTTTTTACTTACTTATGAAGTGTCGATACATAGTCAAGGAGGTTGAACAAGTCATTAGGGATATCGGAAGCTCTTTGGCTGCACTGTCTCTCGCAAATACCGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGATTACAGAGCGAGATGCAAAGGGCGGAGTTTGAAGCTTCACAGTCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAAGCTTTTGCGAACGATATGCTTGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAAAGAGCAGAAGTTATTTTTTTGGAGCAGATCATTTTGCTACTCTCTCAAGCTGACGCTGCAAGGGATTATGAAGAAGTTAAGAAACAGTACTTTAAAAGGGTTCAGGTAATAGAGCGATATGGCTCGAGGGAAAAATATATTCCGCCTCTTAATTCTTTCCTTTGTTCGATAACCGGAGAAGTTATGATAGATCCTGTGAGTCTTTGCACTGGTACTACATGCGAGAGATCTGCCATCAAAGTTTGGTTTGATGATGGAAACTTGACTGACCCTAAAACAGAAGAAGTTCTTGAAGATACTACTTTACGATCGAATGTTCGATTACGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAAGGAAAACTTATTATCCAATTCTGACTTATTGTTGAAAGAGTCCTTGAGTCAAATGCAGGCTCTTATGAGAGAGAACTCAATTAACAAGGATTGGATTTCTATAGGAGAGCTTACCGATACTATTATCTCTATCCTTGGGAACTCTGATTCCACAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGGATCACATTATTTCCTGCTTACAAAATGGCTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAGACCGTTCTGGTTGGAATAGAAGTTTCTGCAAAAGGCTTTCTGAGCATCCCAGCGCAATACTTTACCTTGTTACCATTCTAAAGGAACCTGTCAGTGATTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTTTTGAAATAGATGAGGAAAATGTTTCTTGTGCTGCTAAGTTTGGCTGGTACAAAGAGCTTGTTGATCGCATTATTCAAGGACCGGAGTCTTCAAGAATCTCAATGGTTAAAGCCATGATTAATTTGGAATTGGAAGAATCAAACTTGAAACTCCTTGGCGGGCAAGGAGTTATACCTTCTTTGCTAGAAATGCTATCTGGAAGCATTGAATTGAAAGAATTATCATTATCAGCCTTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTATTGCTGCATATGGAGGTGTGCCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACACGAGCGTTCATTACCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCATCTGATGATGATGGAATTGATTTCTTTATTGACGGAGAAGGGAAACAACTCGAGTTAGATAACATTATCACCAATTTGCTAGCTCTACAGCAGCTTCCTAACTCAGTTCAGTATTTCCGTAAGCCTGCATTGCGCACTCTTCTTGGCATTTGTAAGTTTGAAACAGGTTTAGTTAAGAAGGCGGTTTTGGCAGCGAATGGTGTATCACAAATTCTTCCCCTTCTTGATGACCCTGACTCGGAAATCCGGGAAACTGCCATATGTCTTCTCTTTCTTTTCTCACAACATGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCGAGAAGACTCGAAGCTTTAGTCGGGTTTCTTGAGAATGATGAAAATAATGATGTACAAGTAGCTGCTGCTGGTTTACTTGCCAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATCAATTTGGGTGGCCTTGAAGCAATCGTAAACATTTTGAAAAATGGTACGATGGATGCAAAAGAAAACGCTCTCAGTGCACTCTTCAGGTTTACAGATCCAACAGATATTGAGTCACAGCGTGATTTGGTTAAACGGGGAATATATCCTTTGCTAGTAACTTTTCTCAATACTGGTTCAGTGACAGCAAAGGCGAGAGCAGCAGCATTTATCGGTGATCTATCCATGAGCACTCCAAAGCTCACAGTTGCCTCAAAATCAACCTTTTCCTGGTGTTTTAGATCATCTCGAGCTTCTTTATGTTCAGCACACGGAAGCGTTTGCAATGTGAATTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGTTTGATAAGGCTTTTACAGGAGGAAGTTCATGCAACTGCTTATGAAGCTATACAAACACTTTCCACATTGGTTTTAGAAGACTTTCCTCAGAGAGGAGCTCGTGTGTTGCACGAGTCGAATGCAATGAGGCCGTTATTGAAAATTTTGAACTGGGGAAGTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGATTATTATGGATCAACGGCTAGGTTACGTCTATTTGGTCTTACCGGCATGAATGTATATGGTGATGGCCACCTAAGGAGAAAGGCTGCAAGGGTACTGTCATTGCTTGAACGCTATTCGAGGTCAAGGTCGTCATCATCTTCAATCACTGCTGTTGTTAGTGAGAATCGACGCTTATAA 3072 0.4062 MVGMELIPIGTILAVLTSQVIKTANAAIDVLVEKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVDKYRNRGRFYLLMKCRYIVKEVEQVIRDIGSSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAARDYEEVKKQYFKRVQVIERYGSREKYIPPLNSFLCSITGEVMIDPVSLCTGTTCERSAIKVWFDDGNLTDPKTEEVLEDTTLRSNVRLRESIVEWRELNYCFRIKSIKENLLSNSDLLLKESLSQMQALMRENSINKDWISIGELTDTIISILGNSDSTDVKMKILITLKDAVEGHARNKEKVVESQGWDHIISCLQNGSRISKEAIDLLYELLQDRSGWNRSFCKRLSEHPSAILYLVTILKEPVSDSTGIAEKILMELFEIDEENVSCAAKFGWYKELVDRIIQGPESSRISMVKAMINLELEESNLKLLGGQGVIPSLLEMLSGSIELKELSLSALVKLAGVHANKGIIAAYGGVPLVLDLMFSRRTRAFITIKCFEILEKLSSDDDGIDFFIDGEGKQLELDNIITNLLALQQLPNSVQYFRKPALRTLLGICKFETGLVKKAVLAANGVSQILPLLDDPDSEIRETAICLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAAAGLLANLPKSERKLTMQLINLGGLEAIVNILKNGTMDAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVTFLNTGSVTAKARAAAFIGDLSMSTPKLTVASKSTFSWCFRSSRASLCSAHGSVCNVNSTFCLLEANALPGLIRLLQEEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLKILNWGSDSLKAEALGLLEKVFVSKEMVDYYGSTARLRLFGLTGMNVYGDGHLRRKAARVLSLLERYSRSRSSSSSITAVVSENRRL* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2723 1023 Coils Coil 69 89 - -
Tpr1g2723 1023 SMART arm_5 715 757 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 875 915 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 919 959 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 408 447 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 537 576 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 673 713 IPR000225 GO:0005515
Tpr1g2723 1023 SMART arm_5 758 799 IPR000225 GO:0005515
Tpr1g2723 1023 Gene3D - 643 853 IPR011989 -
Tpr1g2723 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Tpr1g2723 1023 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Tpr1g2723 1023 SUPERFAMILY ARM repeat 336 797 IPR016024 -
Tpr1g2723 1023 Gene3D - 334 642 IPR011989 -
Tpr1g2723 1023 Gene3D - 860 1007 IPR011989 -
Tpr1g2723 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Tpr1g2723 1023 SUPERFAMILY ARM repeat 647 1003 IPR016024 -
Tpr1g2723 1023 Coils Coil 127 154 - -
Tpr1g2723 1023 CDD RING-Ubox_PUB 265 305 IPR045210 -
Tpr1g2723 1023 SUPERFAMILY RING/U-box 248 331 - -
Tpr1g2723 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Tpr1g2723 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Tpr1g2723 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Tpr1g2723 1023 Gene3D - 8 123 IPR036537 GO:0007166
Tpr1g2723 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2723 Tpr-Chr1 31339314 31343753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2723 69 959 U-box Gene Family AT1G68940 23.023 5.84e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2723 - - gmx:100816935 1599.33