Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2722 ATGGATTGTGAAAGATCTAATATCACAATTTTGGTTGTGGACCATGATGAAGAGTCTTTGGCATTTGTTGCTAAGACACTCATGGAACGACAATACAAAGTTGAAACTGCCAAAAATGCTCATGATGCTTTGGTCACTCTTCGAAATAATGAAGGCTTGTTTGACATCATCGTTACAGAGTTCCATGTATTAGGAATGGATGGCTTTGGTTTTCAAAGGCACATTCAAGATCAATTTCAAATTCCTGTAATAATTTGGCATCAAAAGTTTCCCATTATTCGTCCCCGTGAGCTTAGCTCAATTGTGATGTCTAAGGATAATCGGCAACACTTAATATCTATGACATTAGAAAAAGGAGCAACACATTTTATTGTGAAACCTGTCTGTGCTGAAGATTTCAAAGACATATCGATGTATGTTGTTGAAGCAAAGAAACATAAATTATTTATTGATAATTTATTTGTACAAAGTGAAGAACAAGAGTCAAGTGAGCAGGCCAAGACAAAGAAAGAAGATTCCAAGAGAAAAAATATTGATGAGTCTCAAGGAGAAGCAAAATGTAAACTTGTTAAGAAATCATCAAGACTTGTTTGGACAGATGATCTTCACAATTTATTTCTTGATGCTATTAAAAAAGTTGGATTGAAAAAGGCTGTTCCAGGAAAAATTCTAGAACTCATGAACATACCTAACTTGACAAGGGATAATGTAGCAAGTCACCTGCAGAAATATCGCCTTTTTTTGGATAAAGTTGCCGAGAAAGAATTGGTTGGAAATGCATCTCAGAGAGCTTTCAGGTCAAGATTTGCATCAAATATTCCAACATCGATAATCGAAGAAATAAAAGAAATGAGAACAAATATATTTGATGTACCAACATTATATCAAATTGGAAATTGTTATTTTAATCATATGAATCATGGTGAGAAAAATTGGAACTGTAAATATTTGAACAGCTCTAATATTGGATCATGTGTGCTGAATGAGTCACCTTTAAGTGTAAATCAAAACTCCATGCAGATGAATGAGAACAATGATGCAAGTGCATTTTTGAAATCTGATCTTATTAATTCAATTCAAGATGTGCAATCCCTTGATCAGTTATATAAAGGTGGTGATGATACATCTCTAGTTGGAAACACATCATGTGTGCTGAATGAGTCACCTTTAAGTGTAAACCAAACCTCCATGCAGTTTTATAAAGGTGGTGATGTAATAGCTTCTTCTTCTGCTGAAATCAATTCATGTATGTTGAATGAGTCACCAATAAGCTTGGACCAAAATTCTAATCAGTTGCAAGGATATGAACAATATTCAAATGAAGAACTATATGATATGTTTGTGGGAGACAAAATGTCTGAAGCAAGTACCTCAGCTACTAATCCGATATCGGATATGGATCTTTTTGAAGCCGTGTTTGGTACTACCAGTCAAAACAATAATTTTAAGTTTATTTAG 1458 0.3395 MDCERSNITILVVDHDEESLAFVAKTLMERQYKVETAKNAHDALVTLRNNEGLFDIIVTEFHVLGMDGFGFQRHIQDQFQIPVIIWHQKFPIIRPRELSSIVMSKDNRQHLISMTLEKGATHFIVKPVCAEDFKDISMYVVEAKKHKLFIDNLFVQSEEQESSEQAKTKKEDSKRKNIDESQGEAKCKLVKKSSRLVWTDDLHNLFLDAIKKVGLKKAVPGKILELMNIPNLTRDNVASHLQKYRLFLDKVAEKELVGNASQRAFRSRFASNIPTSIIEEIKEMRTNIFDVPTLYQIGNCYFNHMNHGEKNWNCKYLNSSNIGSCVLNESPLSVNQNSMQMNENNDASAFLKSDLINSIQDVQSLDQLYKGGDDTSLVGNTSCVLNESPLSVNQTSMQFYKGGDVIASSSAEINSCMLNESPISLDQNSNQLQGYEQYSNEELYDMFVGDKMSEASTSATNPISDMDLFEAVFGTTSQNNNFKFI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2722 485 PANTHER RESPONSE REGULATOR 23-RELATED 101 433 - -
Tpr1g2722 485 PANTHER RESPONSE REGULATOR 23-RELATED 7 85 - -
Tpr1g2722 485 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Tpr1g2722 485 Gene3D - 6 168 - -
Tpr1g2722 485 ProSiteProfiles Response regulatory domain profile. 9 141 IPR001789 GO:0000160
Tpr1g2722 485 Gene3D - 190 252 - -
Tpr1g2722 485 SUPERFAMILY CheY-like 6 142 IPR011006 -
Tpr1g2722 485 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
Tpr1g2722 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 249 IPR017930 -
Tpr1g2722 485 PANTHER TWO-COMPONENT RESPONSE REGULATOR 101 433 IPR045279 GO:0009736
Tpr1g2722 485 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 85 IPR045279 GO:0009736
Tpr1g2722 485 MobiDBLite consensus disorder prediction 161 181 - -
Tpr1g2722 485 SMART REC_2 8 137 IPR001789 GO:0000160
Tpr1g2722 485 Pfam Response regulator receiver domain 10 85 IPR001789 GO:0000160
Tpr1g2722 485 MobiDBLite consensus disorder prediction 162 181 - -
Tpr1g2722 485 Pfam Myb-like DNA-binding domain 197 245 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2722 Tpr-Chr1 31316077 31321789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2722 8 269 Response Regulator Gene Family AT5G07210 32.131 9.01e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr1g2722 Response_reg 9.8e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2722 - K14491 mtr:MTR_0450s0040 304.679