Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2708 ATGCCTTTGAGGCAAATGAAAGAGAGTTCAGAACAACATCTTGTGATAAAACCTCATATGCAAAACAATATGAGTCAAAATCAAGTTAAGAAAGTTACTAAAGCTGTTCAAAATGGTAAAGGTTCTTCACCATTGTTGTCACAAGAACAAACTTCACCACCACCTCAAGTAAAGAATGGTGGAAGAAGAAGGAGTAGAAATGGTAGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGACCTTGTACTACTGTTGTGAAAAATAATGATAATGGTCATGTTGAAAATGGAAGCATAATCACTTCTAGTGATGTTGAGATGAGTTTTCCTACTTCAAGTAAGTCTTTGAGTTTTGCTCAAAGACCTGGTTATGGACAAGTTGGTACAAAATGCATTGTTAAAGCTAATCACTTCTTTGCAGAATTACCAGACAAAGACTTGAATCAGTATGATGTAACTATTACACCTGAAGTGTCGTCCAAAGCCGTTAACAGATCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAATCTGACCTTGGCATGAGACTTCCAGCGTATGATGGCCGAAAAAGTTTGTACACAGCGGGGGTTCTTCCCTTTTCCTGGAGAGAGTTTAAGATTAAGCTTATAGAGGAAGAGGATGGAATTAATGGCCCCAAAAGGGAAAGAGAATACAAAGTTGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGGCAATTTCTAGCTGGAAAGCGTGCGGATGCTCCACAGGAGGCAATACAAATTCTTGACATTGTACTAAGAGAGCTAGCATCAAAGAGGTTCTGTCCGATTGGGAGGTCCTTTTATTCACCTGATATTCGAACACCACAACGACTCGGAGAAGGATTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCGGTGGTGGAATTTGTTGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAGTTGTCTGATGCGGATCGAATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTTAGACGAAAGTATCGTGTTTCCGGTATAACGTCTCAACCAACAAGAGAACTTGTGTTTCCTGTCGATGAGAACTCAACAATGAAATCAGTGGTTGAATACTTCCAAGAGATGTACGGTTTCACTATTAAACATACACACCTTCCGTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACTTCTCTTTTGAAAGTCACGTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACGGTTCAGCACAACGCTTATGATCAAGATCCTTACGCAAAGGAATTCGGGATTAAAATCAGCGAGAAGTTAGCTTCGGTGGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAGTATCACGAGAGTGGGAAAGAGAAAAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACCGTTAGCCGCTGGGCATGCATCAATTTTTCACGAGGCGTGCAGGATAGTGTTGCTCGTACTTTTTGTAACGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCTGGAGCCTGTTATCCCGATCTACAATGCAAAACCCGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTTATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTACTTAGCCAATGTGTCTCTGAAGATCAACGTTAAGATGGGTGGTAGAAACACCGTTCTTGTTGATGCGGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACAATAATATTTGGAGCAGATGTTACCCACCCTGAAAACGGGGAAGACTCCAGCCCCTCAATAGCAGCGGTAGTAGCGTCGCAAGATTGGCCTGAAGTTACAAAGTATGCAGGTTTAGTATGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGGGCAACCGGACAGAAGCCACAAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTTTACTATACGAGTTGGATGCAATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAACGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGAAACAGCACCGATAGGAGTGGAAATATCCTGCCTGGAACTGTTGTTGATACCAAAATCTGTCATCCAACGGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCAGACGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGCTTCTACACAGAGCCAGACCTACAGGAGACTGGCTCCACCGGTGGTCGTGGTTCGAAAACAACACGTGCAGCCGGTGATTGCGGTGTCAAGCCATTGCCAGCGTTGAAGGAAAATGTGAAGAGAGTTATGTTTTATTGTTAG 2946 0.4233 MPLRQMKESSEQHLVIKPHMQNNMSQNQVKKVTKAVQNGKGSSPLLSQEQTSPPPQVKNGGRRRSRNGRKSDQVDVLMRPSCRPCTTVVKNNDNGHVENGSIITSSDVEMSFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2708 981 Pfam Mid domain of argonaute 527 604 IPR032473 -
Tpr1g2708 981 ProSiteProfiles PAZ domain profile. 329 444 IPR003100 GO:0005515
Tpr1g2708 981 Pfam N-terminal domain of argonaute 133 267 IPR032474 -
Tpr1g2708 981 Pfam Argonaute linker 1 domain 277 326 IPR014811 -
Tpr1g2708 981 MobiDBLite consensus disorder prediction 18 58 - -
Tpr1g2708 981 CDD PAZ_argonaute_like 328 443 - -
Tpr1g2708 981 Gene3D paz domain 322 448 - -
Tpr1g2708 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 59 980 - -
Tpr1g2708 981 Pfam Argonaute linker 2 domain 470 516 IPR032472 -
Tpr1g2708 981 Pfam PAZ domain 352 460 IPR003100 GO:0005515
Tpr1g2708 981 ProSiteProfiles Piwi domain profile. 618 939 IPR003165 GO:0003676
Tpr1g2708 981 SUPERFAMILY PAZ domain 323 484 IPR036085 GO:0005515
Tpr1g2708 981 PANTHER PROTEIN ARGONAUTE 10 59 980 - -
Tpr1g2708 981 Pfam Piwi domain 619 937 IPR003165 GO:0003676
Tpr1g2708 981 Gene3D - 508 681 - -
Tpr1g2708 981 SMART DUF1785_2 276 328 IPR014811 -
Tpr1g2708 981 MobiDBLite consensus disorder prediction 18 74 - -
Tpr1g2708 981 Gene3D - 687 981 IPR036397 GO:0003676
Tpr1g2708 981 CDD Piwi_ago-like 488 938 IPR045246 -
Tpr1g2708 981 SUPERFAMILY Ribonuclease H-like 610 939 IPR012337 -
Tpr1g2708 981 SMART Piwi_a_2 618 939 IPR003165 GO:0003676
Tpr1g2708 981 SMART PAZ_2_a_3 333 466 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2708 Tpr-Chr1 31106454 31114224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2708 1 981 Eukaryotic Initiation Factors Gene Family AT5G43810 81.600 0.0 1648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2708 K11593 - gmx:100816999 1775.76