Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2705 ATGGATACATCTCTCTCTTTCTCTAGACTCCTCTCTTCTTCCACCACCACATCACTCTTATCTCCCAAAACCAAAACCCTCTCTTCCAATTTTACCCTCCCCCTCAAACTCAACCGTTTCAACCCAAAACCTCTCCGATTTTCCACTTCATCCAAAATCTCCGCCACCATCTCCGTCGGCGACAAACTTCCCAAATCCACCTTCTCATACCTCGACCCCGCCGGCGAAGTTCAAACCATAACAGTTTCCGACCTAACAAAAGGCAAAAAAGCCGTTCTCTTCGCCGTTCCAGGAGCTTTCACACCAACATGCTCACAGAAACACTGCCAGCTTATCATGTGCGATTGTTCCAGCTTAATAGGGTGTTTTAGATTCGTTTTTCAAAAGCTTTGCGCGCGTAAATTGATTCTGATTATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTTGGTGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAAGAAAGGGGTTAGCCATTGCTGGTATGTCAAACTCCGAAAAAAGTATTGAGCAAATTAATGCTATGAATGAGGTTGGAGTGTTTGATGTCTGCAAAGAGAATCCAATTGTTGAACTTTTTGAGTTAGAAAACGTTGGTCAATCAGCCAATAAAGTCAATGCCATATTTGGTACTTCTTCCCCTGATGTTGCTGCTAAAGAAGTGGGAGATTTAGAAAGTTATGAAGCTCTGAATTTTGCAGAAGACACATTGGTGACTCCCCAATGTGAGGTCATTGATCACACTATTGTTGATTGCTCGTCCGTTTTCAATGTTGACGATGACACTGACGATGACATCCATGTTGGAATGTCGGCTTCTAAGCGATATCGCAGGTCTTTCATGAGTAACACAGATGATGATTTTGTTGAAGAAATTTCTGGTGAAATTGATGGAACAACAATTTGGAGAGAAAGAATTTAA 1626 0.4034 MDTSLSFSRLLSSSTTTSLLSPKTKTLSSNFTLPLKLNRFNPKPLRFSTSSKISATISVGDKLPKSTFSYLDPAGEVQTITVSDLTKGKKAVLFAVPGAFTPTCSQKHCQLIMCDCSSLIGCFRFVFQKLCARKLILIMGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVWWKVSIQDVMNTTRIFLDPEIKETSELRKGLAIAGMSNSEKSIEQINAMNEVGVFDVCKENPIVELFELENVGQSANKVNAIFGTSSPDVAAKEVGDLESYEALNFAEDTLVTPQCEVIDHTIVDCSSVFNVDDDTDDDIHVGMSASKRYRRSFMSNTDDDFVEEISGEIDGTTIWRERI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2705 541 Gene3D - 169 269 IPR012340 -
Tpr1g2705 541 SUPERFAMILY Thioredoxin-like 56 111 IPR036249 -
Tpr1g2705 541 SUPERFAMILY Nucleic acid-binding proteins 165 268 IPR012340 -
Tpr1g2705 541 Pfam Redoxin 59 111 IPR013740 GO:0016491
Tpr1g2705 541 CDD RPA1_DBD_A_like 181 267 - -
Tpr1g2705 541 Pfam Domain of unknown function DUF223 203 295 IPR003871 -
Tpr1g2705 541 Gene3D - 273 400 IPR012340 -
Tpr1g2705 541 SUPERFAMILY Nucleic acid-binding proteins 280 396 IPR012340 -
Tpr1g2705 541 Gene3D Glutaredoxin 54 168 - -
Tpr1g2705 541 PANTHER PEROXIREDOXIN 4 109 - -
Tpr1g2705 541 PANTHER PEROXIREDOXIN 4 109 IPR037944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2705 Tpr-Chr1 31068963 31071331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2705 160 390 Core DNA Replication Machinery Family AT5G45400 24.082 1.97e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2705 - - mtr:MTR_8g062030 235.728