Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2678 ATGATGGATCTTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGGAGTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTCTATGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTCTGGAGTCGAGGGTGACTACAATGTTATGGCTATTGACCTTCTTGGACCGAGTCTCGAAGACTTGTTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTATTAAACAGAGTAGAGTATATGCACTCTCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTCTAATGGGTTTAGGTCGCAAGGCAAATCAGGTATATATTATTGACTATGGCCTTGCGAAAAAGTATCGTGATCTTCAAACACACAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACCGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGACTCTTCCGTGACCTATTCATTAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACACGGCCAAGTGTGAAACCAGTATTAAACCCAGCACCATCTGGAGAGCGAGAGCGATTAGAACGGCCTTCAGTTGGACAAGAGATTCGTGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCACATGGACTGCATAAGGATCTTGCCAAGCAGCACAGGTCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGAAAGGGCTCGCAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAACAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGGTCTCGAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTTTTGACTCCAAATCATCCTTCACCCGTGCCACCGCAGGGACACGAGGTAGTCGCGATGATGCACTCAGGAGCTTTGAGCTCCTGACAATTGGTACTGGAAAAAAGAAATGA 1404 0.4259 MMDLVIGGKFKLGRKIGSGSFGELYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPVLNPAPSGERERLERPSVGQEIRDRLSGAVGAFSRRNGSAHGLHKDLAKQHRSLDNMPSPKDVQPDSERARSSTRNGSASKRPMISNSRPSSSGEPSESRSSRLVSSSSRLSTTQRVQPGFDSKSSFTRATAGTRGSRDDALRSFELLTIGTGKKK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2678 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tpr1g2678 467 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2678 467 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Tpr1g2678 467 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 452 - -
Tpr1g2678 467 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Tpr1g2678 467 Pfam Protein kinase domain 11 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2678 467 CDD STKc_CK1_delta_epsilon 9 283 - -
Tpr1g2678 467 SMART serkin_6 10 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2678 467 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Tpr1g2678 467 MobiDBLite consensus disorder prediction 381 444 - -
Tpr1g2678 467 MobiDBLite consensus disorder prediction 361 450 - -
Tpr1g2678 467 MobiDBLite consensus disorder prediction 304 332 - -
Tpr1g2678 467 PANTHER CASEIN KINASE-RELATED 2 452 - -
Tpr1g2678 467 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2678 Tpr-Chr1 30787289 30794580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2678 9 214 MAP Kinase Kinase Kinase AT3G06030 27.315 1.08e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tpr1g2678 Pkinase 5.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2678 K08960 - mnt:21404312 787.719