Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2672 ATGGCAGATCCCGATACTTTTACGAATCCTGACCGGGATATTGAACAAGCATTGGTTACTTTGAAAAGAGGAACTCAGTTAGTCAAGTATTGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCACAGGATGAAACATCCCTGATTTGGATTTCTCATGGAAAGGAAAAGCATCTGAAGTTGGCTTCTGTTTTGCGCATCATCTCGGGACAGAGAACAGCTGTCTTTAGAAGATTTTTGCGCCCTGAAAAGGATTATCTATCATTTTCACTTATTCATAAAAAAGGCGAAAGATCACTTGATCTGATCTGCAAGGATACAGCTGAAGTTGAGATATGGCTTTCGGGCCTAAAGGAATTAATTTCTACTGGGCATAGAAAGCGGCGCTCTTCAAGTGAATTGACAGATGATAGCGTTGATTCTTCTCCGATTGATCGTCCTTTTGGTGGGGCACTAGAGTTGAATTCAACCATTTCCACTGGCAGGTTTTCTTTTGAATCAGCTTTTCGTGAACCCACATCAAGTAGAAGACGGTCAGATGTGGGGTCAGATAGTGCGAGTATGCCAGTAAGGACAAGTGTTGGAGATTGTTCCCGTATTAGTGTGTCAAGTGTTGGCTATGCTTGTAGTGTAGGATCAGGGCCAGATGACATTGAGTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGGGTCGACGGAAATTCCTCTGATGGGTTAGGGAGTCAAGTCCCTTCCAAGACAGATGTTCATATTCCTAAGCTATTAGAGTCTAACGTTGTTCTCGATGTTCATCAGATAGAACCCGGTGTAAGTCATATTGCTCTAGTAACACGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGGCGGGAGACTTGGACATGGAATCGATAAAGATTTTGGTAAACCACGTCTTGTTGAGTCCATAGCAGTTACTAATATGTGTTTTGTTGCTTGTGGTGAATATCATACATGTGCTGTAGCTGCATCTGGGGATCTATACACATGGGGTGACGGTACACATAATGCAGGAATTCTAGGTCATGGAACCGATGTTAGCCATTGTATACCGAAGAGAGTCACCGGCTTTTTAGAAGGACTTCAGGTTGTATGTATAGCCTGTGGCTCATGGCATACAGCATTGATAACCTCCAATGGGAAACTTTTTACCTTCGGAGATGGAATGCTCGGTGTCTTGGGGCATGGAGATAGAGAGAGTGTTTCATATCCAAAGGAGGTAGAGTTATCGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACTGCAGCCATTATAGAGGTTAATGATGAATCAGGTTCAAATGCTTCTGCATCAAAGAGACTATTCACATGGGGTGATGGCGATCAATATCGATTAGGTCATGGTAACAAGGAAACCTATCTTCAACCGACTTGTGTGGCTACACTTGCTGAATATAATTTTCAACAGGTTGCATGCGGACAAAGTTTCACTGTTGCACTAACCGCATCTGGACATGTTTTTACTGTGGGAAGCACAGCATACGGTCAACTAGGAAATCCAAACTCTGATGGAAAAGTACCGATTCTAGTAAGAGATAAATTACAAGGTGAAACTGTTGAAGAAATATCATGCGGCACACATCATGTTGCTGCATTGACTTCAAGAAGTGAACTATATACTTGGGGAAGAGGTGCGAATGGAAGATTAGGACATGGAGACACGGAAGATCAGAAAACTCCAACGTTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAGTATTGCATGCGGCGCAAATTTTACAACTTCTATATGCATACATAAATGGGTTTCTGGGAATGACCAATCGGTTTGCTCCGGTTGTAGACAACCTTTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGCATTGTCATCCTTGTAGTTCGAAAAAGGCCCTGAAAGCAGCATTGGCTCCATCACCTAGCAAACCACATCGCGTGTGTGATGCTTGTCACGGAAAGCTTAAAGGTTCTGATAGTCTTAACACTTCCAATTATAATAGAGAAATTAGTCGTCCAGTTAGTACCTCACATGGAAAAAATGACAGGGGAGAGGTAAAGCCTTCAAAAATTCTTTTGACTTCTACTGCCATAGGTCTAGTGAAATATCTTGACTTAAGAAGTGCTATGCTTGGAAGTACACGCGAACCTTCTCCCACGGGAAGAGAGGCTCAAAATCCGTTGAGTTTGCAATTGAAAGATGTCATATTTCCAGGTTCATCAAGTTCCACACAGAATGCTCCCAGGCCTCTTATTATGCCGCAAAGTCAACCACCAACTGCACCTTCATCAGCTACTTCAAGACCAACCTCACCATATTCAAAAAGACCGCCTAGCCCGACACGTTCTAGTTCCCCTGGATTTTCAAGAACCATTATTGATAACTTAAAGAAGAAAAATGAGCTTTTGAATCAAGAAGTCTCAAAGTTGCAAAACCATATTCGAAGTTTAAAGCAAAAGGGTGACATGCAAGATATGAAGATTAACGAGCTTCAGAAAAATATTGAGGAAGCACATCTATTGGCTGGAGAGGAATATTCTAAGCATAGAGAAGTAAGGGATTTCATCAAGTCTATGGCAGATGAGTTGAGGGAAGTGACAGAAAAGTTGCCACCAGAGATTCCTGGCAGTGAAACCTTGAAAGAGATCCATGCTCAAGCACAATATATTCTGAAAGAAAATGTAGAATTTGAATCTTCTTCATTCCAATCGGGCTTTAAGTCTGAGAAACAAACTGCACATGGTGTACCAGCATCAGAAGGAAATGATGAAGCTTCTGAGGCTGTTCCATCTATAGATGGAGGAAATGTTCATCACAAATGCAGAAGATCGTATGTATCGAGTCCAGGAGTGTCTCCACCAAGTTCAGAAAATCGTTCCAAATCACCTGAATCTCACAATCCTGTGAGTGAAGAAGAAACATCTATCATTGAACAATTTGAACATGGTGTCTATGTCACAGTCAGTTTACTACCTGGTGACGTAAAAGTTTTCAAACGTGTTCGATTCAGTAAGAGAAGATTCAATGAGCAACAAGCAGAAGAATGGTGGAACAATAACAGAGATAGGTTGCAAAGGAGATACAGTCTACCACCTGAAATGATTGGTTCGTCGACCACCTCACCTCATGCTGAAGAAAATGGTTAG 3204 0.4195 MADPDTFTNPDRDIEQALVTLKRGTQLVKYCRKGKPKLCNFRLSQDETSLIWISHGKEKHLKLASVLRIISGQRTAVFRRFLRPEKDYLSFSLIHKKGERSLDLICKDTAEVEIWLSGLKELISTGHRKRRSSSELTDDSVDSSPIDRPFGGALELNSTISTGRFSFESAFREPTSSRRRSDVGSDSASMPVRTSVGDCSRISVSSVGYACSVGSGPDDIESLGDVFIWGEVWVDGNSSDGLGSQVPSKTDVHIPKLLESNVVLDVHQIEPGVSHIALVTRQGEVFTWGEDSGGRLGHGIDKDFGKPRLVESIAVTNMCFVACGEYHTCAVAASGDLYTWGDGTHNAGILGHGTDVSHCIPKRVTGFLEGLQVVCIACGSWHTALITSNGKLFTFGDGMLGVLGHGDRESVSYPKEVELSSGHKAIKVACGVWHTAAIIEVNDESGSNASASKRLFTWGDGDQYRLGHGNKETYLQPTCVATLAEYNFQQVACGQSFTVALTASGHVFTVGSTAYGQLGNPNSDGKVPILVRDKLQGETVEEISCGTHHVAALTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEALKERHVKSIACGANFTTSICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVHCHPCSSKKALKAALAPSPSKPHRVCDACHGKLKGSDSLNTSNYNREISRPVSTSHGKNDRGEVKPSKILLTSTAIGLVKYLDLRSAMLGSTREPSPTGREAQNPLSLQLKDVIFPGSSSSTQNAPRPLIMPQSQPPTAPSSATSRPTSPYSKRPPSPTRSSSPGFSRTIIDNLKKKNELLNQEVSKLQNHIRSLKQKGDMQDMKINELQKNIEEAHLLAGEEYSKHREVRDFIKSMADELREVTEKLPPEIPGSETLKEIHAQAQYILKENVEFESSSFQSGFKSEKQTAHGVPASEGNDEASEAVPSIDGGNVHHKCRRSYVSSPGVSPPSSENRSKSPESHNPVSEEETSIIEQFEHGVYVTVSLLPGDVKVFKRVRFSKRRFNEQQAEEWWNNNRDRLQRRYSLPPEMIGSSTTSPHAEENG* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2672 1067 SUPERFAMILY RCC1/BLIP-II 224 610 IPR009091 -
Tpr1g2672 1067 Gene3D - 184 449 IPR009091 -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Tpr1g2672 1067 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Tpr1g2672 1067 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 773 808 - -
Tpr1g2672 1067 CDD PH_PLC_plant-like 12 124 - -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 1051 1067 - -
Tpr1g2672 1067 SUPERFAMILY FYVE/PHD zinc finger 609 681 IPR011011 -
Tpr1g2672 1067 SUPERFAMILY PH domain-like 13 123 - -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Tpr1g2672 1067 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1050 - -
Tpr1g2672 1067 Pfam FYVE zinc finger 609 674 IPR000306 GO:0046872
Tpr1g2672 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 680 IPR013083 -
Tpr1g2672 1067 ProSiteProfiles BRX domain profile. 993 1048 IPR013591 -
Tpr1g2672 1067 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 376 386 IPR000408 -
Tpr1g2672 1067 Coils Coil 812 839 - -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Tpr1g2672 1067 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Tpr1g2672 1067 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1050 - -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Tpr1g2672 1067 Gene3D - 450 621 IPR009091 -
Tpr1g2672 1067 Pfam Transcription factor regulating root and shoot growth via Pin3 994 1047 IPR013591 -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 171 190 - -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 334 386 IPR000408 -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 454 501 IPR000408 -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 558 603 IPR000408 -
Tpr1g2672 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 681 707 - -
Tpr1g2672 1067 SMART fyve_4 607 676 IPR000306 GO:0046872
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 921 992 - -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 1047 1067 - -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 777 808 - -
Tpr1g2672 1067 Gene3D - 13 132 IPR011993 -
Tpr1g2672 1067 MobiDBLite consensus disorder prediction 967 992 - -
Tpr1g2672 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2672 Tpr-Chr1 30702687 30710613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2672 996 1049 Major Intrinsic Protein MIP AT1G31880 37.037 2.33e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2672 - - gmx:100778984 1415.21