Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2669 ATGGTTAGAGCTCCTTGTTGTGAGAAGAAGGGATTGAAGAAGGGTCCTTGGACCTCAGAAGAAGATGAAATCCTCACATCTTACATCCAAAAACATGGACATAGTAATTGGCGTGCCCTCCCAAAAGATGCCGGCTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTACTTAAGACCAGATATTAAGAGAGGAAATTTCACAAATGAAGAAGAAGATATTATCATTAAGATGCATGAATTGCTTGGGAACAGGTGGTCAGCAATAGCTGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAGACTAATCAAAAACACTAATAATCAACCAAATTCAAATACCAAAAAAAGAGCATCAAAATCAAAAATCAAAAGAACTGATTCCAATTCAAGTACTTTAATTCAATCACAAGATCCTTCTAATAGTCCTAATAATAATTTAATTGAAATGGAAACTGCATCATCAAATTCCAATTTTTCTAGTGATTTTTCATCACAAGGAAAAAATATTGACAATAGTGTCAATAATTTTGAAGACCCTGAAGACTCATTGGTGACAATGCTTGAAATTGATGAGAGTTTTTGGTCAGAGACAATAACTGATGATGAAATAAGTTCAACCATGCCATCAAATTCTATGACAATTATTTCAAATGAATTGCCAAATGAGCAATATCCTATTAATAATTCGTTGGAAAATATCCAAAAATCCTTTGATGATGATGATGGTATGGATTTTTGGTATGATCTGTTCATTAGATCAGGGGAAACAACAGAATTGCCAGAGTTTTAG 834 0.3333 MVRAPCCEKKGLKKGPWTSEEDEILTSYIQKHGHSNWRALPKDAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEDIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLIKNTNNQPNSNTKKRASKSKIKRTDSNSSTLIQSQDPSNSPNNNLIEMETASSNSNFSSDFSSQGKNIDNSVNNFEDPEDSLVTMLEIDESFWSETITDDEISSTMPSNSMTIISNELPNEQYPINNSLENIQKSFDDDDGMDFWYDLFIRSGETTELPEF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2669 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr1g2669 277 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr1g2669 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr1g2669 277 CDD SANT 69 112 IPR001005 -
Tpr1g2669 277 CDD SANT 16 61 IPR001005 -
Tpr1g2669 277 MobiDBLite consensus disorder prediction 139 157 - -
Tpr1g2669 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr1g2669 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr1g2669 277 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr1g2669 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Tpr1g2669 277 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 269 - -
Tpr1g2669 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr1g2669 277 SMART sant 13 63 IPR001005 -
Tpr1g2669 277 SMART sant 66 114 IPR001005 -
Tpr1g2669 277 Gene3D - 68 144 - -
Tpr1g2669 277 MobiDBLite consensus disorder prediction 115 157 - -
Tpr1g2669 277 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2669 Tpr-Chr1 30677963 30680347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2669 1 277 MYB Transcription Factor Family AT2G31180 50.000 1.68e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2669 Myb_DNA-binding 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2669 K09422 - gmx:100794205 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3301 6 35622661 35624108 Tpr1g2669 1 30677963 30680347 PCT