Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2666 ATGGAAAGAAGGGTTCTTGATGGTATTATCAATAGGTTGCTTGAAGTTAGAGGAAGACCTGGAAAACAGGTTCAGCTTTCAGAAGGAGAAATCAAACAACTTTGTATGGTTTCTAGAGATATTTTCTTGAAACAGCCTAATCTTTTGGAACTTGAGGCACCAATTAAGATATGTGGAGATATCCATGGTCAATATTCAGACCTATTAAGCCTATTTGAGCATGGTGGATTCCCTCCACGTTCCAACTACTTATTCTTAGGTGATTATGTAGACCGTGGAAAACAAAGCTTAGAAACAATATCACTTCTTCTAGCCTACAAAATCAAATATCCAGAAAACTTCTTCCTTCTAAGAGGAAACCACGAATGTGCTTCAATAAACCGCGTCTATGGATTCTACGACGAATGTAAAAGGCGATTCAATGTAAGGGTATGGAAGATATTTTCAGATTGTTTCAACTGTTTGCCGGTCGCGGCAATTGTCGATGAAAAGATTATATGTATGCATGGTGGATTGTCTCCTGAATTGCATAGTTTGAAACAGATAAGTAATTTGCCAAGGCCAAGTGAAGTTCCTGAAAGTGGTCTTTTGTGTGATCTTTTGTGGAGTGATCCTTGTAAAGATGTTCATGGTTGGGGTGTTAATGAACGTGGTGTTTCATTTACTTTTGGTGCAAGTAAGGTTGCAGAGTTTCTTCAAAGGCATGATCTTGACTTGATTTGTAGAGCTCATCAGGTTGTTGAAGATGGATATGAGTTTTTTGCTAATAGACAACTTGTGACTATATTTTCTGCTCCTAATTACTGTGGAGAATTTGACAATGCTGGAGCAATGATGAGTGTTGATGAAACACTTATGTGTTCTTTTCAGATATTAAAACCTGTGGATCATAAAATGCCTAAGTTTGGTTTTAGAAGTTCAACTTCATTCAAGGCATTTCTTGGTGCTAAAGTAAGAGCTGATTGA 966 0.3737 MERRVLDGIINRLLEVRGRPGKQVQLSEGEIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYSDLLSLFEHGGFPPRSNYLFLGDYVDRGKQSLETISLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRVWKIFSDCFNCLPVAAIVDEKIICMHGGLSPELHSLKQISNLPRPSEVPESGLLCDLLWSDPCKDVHGWGVNERGVSFTFGASKVAEFLQRHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPVDHKMPKFGFRSSTSFKAFLGAKVRAD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2666 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Tpr1g2666 321 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 317 - -
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Tpr1g2666 321 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Tpr1g2666 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Tpr1g2666 321 Gene3D - 2 303 IPR029052 -
Tpr1g2666 321 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Tpr1g2666 321 SMART pp2a_7 26 296 IPR006186 GO:0016787
Tpr1g2666 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 317 - -
Tpr1g2666 321 SUPERFAMILY Metallo-dependent phosphatases 18 299 IPR029052 -
Tpr1g2666 321 CDD MPP_PP1_PPKL 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2666 Tpr-Chr1 30646072 30648751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2666 33 242 Calmodulin-binding Proteins AT5G63870 30.677 9.69e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2666 K06269 - gmx:100780047 581.637