Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2663 ATGGATTGTTCCTTCATACCCTTTTCATCAAAATCCAATTTTTTTCCACAATCTTCATTTGGGTCACAAGATTCAATCTCATTGAATCCAAAGAATCACCATGAGTTTCTTCCCTTCAATGAAAATGACCCAGAAGAGATGCTTCTATATGGCATGATAGCATCATCATCATCATCACAACAAAAACTAATCACAAGTAGCAAACAAACAACAACTACAAACAACAACAAAGAGAAGAACAACAAGTCCTACCGAGGCGTGCGAAGGAGACCGTGGGGGAAATTCGCGGCCGAAATAAGGGATTCGACAAGACATGGAATAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCATTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTCCAATTGAAAAGGTTAAGGAATCACTTAGAGAAATGAATTATGTGTTGTCTAGTGATGATGAGTGTTCCCCTGTTATTGCTTTGAAGAGAAAACATTCAATGATGAGACGTAAAATGGATGAAAAGAAGAAGAAACATGAGACAGATGTTAGCATAGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAATTGTTGATGTCTTCTGATGATAATCAGAATACTTGGTGA 663 0.371 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKNHHEFLPFNENDPEEMLLYGMIASSSSSQQKLITSSKQTTTTNNNKEKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFPIEKVKESLREMNYVLSSDDECSPVIALKRKHSMMRRKMDEKKKKHETDVSIDNLVVFEDLGAEYLEQLLMSSDDNQNTW* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2663 220 Gene3D AP2/ERF domain 82 143 IPR036955 GO:0003700|GO:0006355
Tpr1g2663 220 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Tpr1g2663 220 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Tpr1g2663 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 212 - -
Tpr1g2663 220 MobiDBLite consensus disorder prediction 65 80 - -
Tpr1g2663 220 PANTHER DNA-BINDING DOMAIN 28 212 IPR044808 GO:0003700|GO:0009873
Tpr1g2663 220 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2663 Tpr-Chr1 30607763 30608632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2663 5 220 AP2-EREBP Transcription Factor Family AT3G23240 58.636 3.90e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2663 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2663 K14516 - twl:120013788 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3468 6 37459453 37460329 Tpr1g2663 1 30607763 30608632 PCT