Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2658 ATGAATTTTGTAACCAAAAACCACTTGATCCGTCATGTATCACAAGCTCCTCCACATAATTATGCTACAAATTTTCCAACCATACCAATAATTGTAGTAGGAGTGATGGCAACATCTTTGTTGCTAATGGCCTACTACACCTTTGTGATCAAATGTTGTCTCAATAGGAACACTATTGATCTTATTATAGAAAGAAATTTGTCTTTTTCAAGACAACATGAAAATCAATCTTCATCGATCTCAATAGCATCGGAGCCAAGAGGACTAGACCAAGAAGTGATTAATTCAATTCCAACAATTCATTACAAAATAGAAAAAGAAAATGGTGAAAGAGTCTCTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAACAAGATGAGAAACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATATTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGTAAAGTTTCATTGACAAGAGAAATCCAAGTTGAACATGTTCTTACTCCAAGACCTTCACCTTATTTGCAAAGCCAAAATGTTGAAAACATCATTAGTGGTTGTGAAGATTTTGTTGTGATTGATTTAGATAATAATGAACATGTTGATGAAGGACAAAACTTGCATGAAATAAGACAAGAAAGAGGTAAAGAATTGGAAGTACCAAGAGATTCTATTAGTCCTTTAAACAAGAAAGCAATTAAGCTTCAAAAAGTGATTAGCATGGGGGATGAGTGTATAATTGGTATGAAAGACAAATTTGATGGTATCTTAATTCAACCAATTAGAAGGTCTTTCTCAATGGACTTATCCATTGAAGTTTGTGGTGATAGTAGTATTAGAGCAAAGAGATCATTCTTTTCCTTTGGACATTGA 891 0.33 MNFVTKNHLIRHVSQAPPHNYATNFPTIPIIVVGVMATSLLLMAYYTFVIKCCLNRNTIDLIIERNLSFSRQHENQSSSISIASEPRGLDQEVINSIPTIHYKIEKENGERVSSECAFCLSEFQQDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRSKVSLTREIQVEHVLTPRPSPYLQSQNVENIISGCEDFVVIDLDNNEHVDEGQNLHEIRQERGKELEVPRDSISPLNKKAIKLQKVISMGDECIIGMKDKFDGILIQPIRRSFSMDLSIEVCGDSSIRAKRSFFSFGH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2658 296 SUPERFAMILY RING/U-box 93 166 - -
Tpr1g2658 296 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Tpr1g2658 296 PANTHER RING-H2 FINGER PROTEIN ATL16 13 277 - -
Tpr1g2658 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 163 IPR013083 -
Tpr1g2658 296 Pfam Ring finger domain 115 158 IPR001841 -
Tpr1g2658 296 SMART ring_2 116 157 IPR001841 -
Tpr1g2658 296 PANTHER RING-H2 FINGER PROTEIN ATL16 13 277 IPR044600 GO:0016567|GO:0016740
Tpr1g2658 296 CDD RING-H2_PA-TM-RING 115 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2658 Tpr-Chr1 30525147 30526528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2658 22 278 C3H Transcription Factor Family AT1G04360 42.907 2.00e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2658 - - mtr:MTR_1g043410 421.009