Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2655 ATGGATTCTTATGAATTATTACAAAACATCGATTCTTTGGATTTTCTCGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTCCTTTGGTCCAATCCAAGTGCGAGCACGGAAATTGACTTTGCAAGTGTGAGCACGGAAATTGACATTCCAAGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGGAAGAGGGGACGTGCTGAATCATGCTACAAGTCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAGCTCAATGAAAGGTTTTGTGATTTGAGTGCTGTTTTGGATCCTGGAAGACCTGTGAGAACAGATAAACCTGCTATACTTGACGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTCAAGAACTGAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCCGAGAAAAATGAACTACGTGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGAGAAGCAATTGAAAACTATGCCGCCACCGATTTCACCAGCAGGGTTTATGCCTCCTCATCCTATGGCTGCTGCTTATCAACCAGGGATGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 702 0.4174 MDSYELLQNIDSLDFLDYSNFIDPSPPTDFLWSNPSASTEIDFASVSTEIDIPSGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSAVLDPGRPVRTDKPAILDDAIRVLNQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKTMPPPISPAGFMPPHPMAAAYQPGMNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2655 233 SMART finulus 80 131 IPR011598 GO:0046983
Tpr1g2655 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Tpr1g2655 233 PANTHER TRANSCRIPTION FACTOR BHLH104 11 233 - -
Tpr1g2655 233 PANTHER BHLH TRANSCRIPTION FACTOR 11 233 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Tpr1g2655 233 Coils Coil 115 170 - -
Tpr1g2655 233 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983
Tpr1g2655 233 CDD bHLH_AtILR3_like 79 154 - -
Tpr1g2655 233 Gene3D - 78 158 IPR036638 GO:0046983
Tpr1g2655 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2655 Tpr-Chr1 30487169 30489985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2655 54 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.742 2.18e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2655 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2655 - - mtr:MTR_1g043430 376.326