Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2654 ATGAAGAATTTTTCTGGGACACCTGGCACTTTTCTTGGAATGATTCTTAGGATAGCACAGTTCAGTTTTGCTGCTGGCTCAATTGCTTCTATTGCTACCACACCTAGTTTCTTTAATTTCACTGCTTTTTGTTATTTGATAGCTTCAATGGCTTTACAAATCATTTGGAGTTTTGCACTTGCTTTGTTGGATGCTTATGCTTTGGTGAGAAAGAAGGTTCTGCTTAACCCTGTATTGATTAGCCTCTTTGTTGTTGGAGATTGGGTAACAGCAACACTATCTCTAGCTGCAGCTTCTGCCTCAGCTGGCATTACAGTTTTGTACTTCCATGATATGGGAAACTGCAATTTTGGAGAGGAGTGCCAAAAATACCAGATTTCTGTTGCTTTTGCATTCATGAGCTGGATATCAATTTCAATATCATCTCTAATTATGCTTTGGCTATTAGCGGCAGGATAG 459 0.3922 MKNFSGTPGTFLGMILRIAQFSFAAGSIASIATTPSFFNFTAFCYLIASMALQIIWSFALALLDAYALVRKKVLLNPVLISLFVVGDWVTATLSLAAASASAGITVLYFHDMGNCNFGEECQKYQISVAFAFMSWISISISSLIMLWLLAAG* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2654 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 - -
Tpr1g2654 152 Pfam Casparian strip membrane protein domain 8 136 IPR006702 -
Tpr1g2654 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2654 Tpr-Chr1 30481318 30485545 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g2654 DUF588 5.5e-23 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2654 - - gmx:100790715 232.646