Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2648 ATGACGGAACGTTCTGAACAAGAAAATGGAACGTTCCAGAAGGTTTTCCGCACAATGGAAAACGACGAAGTCGTTTTTAGAAACGGCAATGCAGTTCTCGTCGCTAAGCCACTCACCGTTGTTCGTGCCTTAACCAGCACCGGCGGCGCTCGCGTTCTTGCTACGCCGCCGTTTCTGAACCCTAACTCCGATGAGTTTGATTCTTGCAAAACTCCGATGATCGAAGTGAAAGACGAGCCTCAAGAATTAGAAAAAGAAGTAAAAACTGTTTCCGTCGATTCTCAATCGGCGGCGGAGGATGTGGTTTACGAGGAGCGGCGTTCGATGTTGTCGTTTGACGATTTTCTTAAATCTACGAATACGCAAGTTGCGTCTGTAGATGAATCATTGAAATCATTGGAAAGTGCTGATGTTGGTGTGGTTTGTGAGATGCAAGAGTCGGTTAAGGTTGAATCGGTAGATGAATCGCTGAAATCAATGGAAGTTGAACCACCGATTCGAACAGTGGAAGAAGTTACCAATGTTGATGTGGCTTGTGAGACGCAGGAATCGGTTAGGGTTGAACCGGTTGGACCGGTTTGTGCAGAGAAGCAAGCAGTTAGCGATGATGAAGTTGAGGTATTGAAGGTAGTGAAGGGGAAACAAGCTGTGAGTGATGATGTGAGGGTTTTGAAGGTGGTGAAGAAGGAAGTAGTGGAAGAGAAGAAGATTCTGATTCCGAATCTCGATGATGGTGATTTCCCTGTTGAGCCTGGCTGGTCATTGCTGGGAAGCAAGGTTGAGACTGCCACTTCCATGGCTAAAGGAGTGAGGAGATTGGTGGATAATGAGATTGTTTATTTCAATTTCCCTAATCCACAAGCCTCTTACAAGTTTCAATGGATCGTTCGTGTCTCGACCAAACGTTCTGGAGTGGTTGGGAGATTGCCAATGGAATGGGCAAAATCTGTTATTCCTCTTGTACAATCAGGAAATGTTAAGGTACGAGGCCGATGCGTTGCTGCACCAGTTAAACTGGAAACAATGCAAGAAATCTATATTTTAGTTAGTTTTTATGCTCACAACTCTTTATTTGCTGAGTGTGTTGATACCTCTTGGAGGTTAGAGGCTTGTGGTCACATTAACTCTGCTGCTTATCCACTCTTTACACTGTTAAATATGCTAGGAATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGGAAGCGGGTGCTTAAGCTTGATTCAGATGAAGCCTTGGTATTTCCTGTTAATAAGCGAAGAAAAGCTGCTGAGCCACTTCCACAGCCAAGTGAGGATGAACAAGCTCTTTCAGAATCAGCTTTGAATAAACTTATTGGAGCTGCAGAAGTCTTTGACCTGGAGGAGAAAGAAGCACCAAAGACCCTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTTTGTATTGGATGACGGAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAAAAATTTACATCCTTGCTGGTCAGCCTACAATTTATGCCATGGAAAGAGAATTTATGTCAACATATTTACCGGAGAGGCGGCAAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTTTGGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATTCTAAGTAATACAGGCAGGATGAAGTCAGAGGACAGTGATGCAGAAAGCATATATGACAACATTTTCTCAACTAAGAGGAGGAATGTTAACCCATATAATGTAGAGGGTGGAACTCTAATTGTTTGTCCCATGGCGTTATTGGGTCAGTGGAAGGATGAACTTGAAACACATTCAAAACCTGGCAGCATATCCATATTTGTTCATTATGGTGGGGGCAGAACCACCAATCCTGATTTGTTGTTAGAGTATGATGTTGTCTTGACTACTTATGGTGTCCTATCCGCTGCATTTAAAAGTGAAGGAGAGAATAGCATCTACCATAGGGTCAAGTGGTATAGAGTGGTGCTAGATGAAGCTCATCATATAAAATCCCATAAAAGCCAGGTTGCTGCGGCTGCTATTGCTCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTAGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGCAACTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTACCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGCGATCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTATTAATGCAGTTGAGACGGTGCTGCAACCATCCATTTTTGGTCATGAGTGGAAGTGATCCTGCGAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTTGAATCTCATACTGAATCATCTGATATGTGCTGCGAAAGCGGTGCACAGCAAAATGCCGAATTGAACAAACTTGCTAGTCTTGCTTGTACATTTCTACAGAATTCTGATTCTGCTTCACACTCTGTCCAATCTCGTGGATATATTGACGAGGTTTTAGGGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAATTTTGTAGAGAATGCCTATTCAATTGCTGGGGTACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAATCACTAAAGAAAAGTGATCTTATTGCACTTCCAACAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACCGAGTCTTCAAAGCTTTCAAAGCTCTTCGATTTCTTAGAAAAAATTCAGAAGTATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACCTCATTTTTCAATCTGTTGGAGAATCCATTAAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGAGAAAGCGTTCTGAAAGAATTTAACAACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATCGGGCAAAAGCGAAAGGTTACTGTAAGAAGATTCATTGTGAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAAAAGATGATATCTGGTGCACTCACTGATGATGAAGTTAGGACTTCTAGGATTCAAGACCTCAAAATGCTATTCTCATAG 3474 0.4243 MTERSEQENGTFQKVFRTMENDEVVFRNGNAVLVAKPLTVVRALTSTGGARVLATPPFLNPNSDEFDSCKTPMIEVKDEPQELEKEVKTVSVDSQSAAEDVVYEERRSMLSFDDFLKSTNTQVASVDESLKSLESADVGVVCEMQESVKVESVDESLKSMEVEPPIRTVEEVTNVDVACETQESVRVEPVGPVCAEKQAVSDDEVEVLKVVKGKQAVSDDVRVLKVVKKEVVEEKKILIPNLDDGDFPVEPGWSLLGSKVETATSMAKGVRRLVDNEIVYFNFPNPQASYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCVAAPVKLETMQEIYILVSFYAHNSLFAECVDTSWRLEACGHINSAAYPLFTLLNMLGIEPYRKADFTPEEMKARKRVLKLDSDEALVFPVNKRRKAAEPLPQPSEDEQALSESALNKLIGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTEIEKGGDDENAEKNLHPCWSAYNLCHGKRIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNTGRMKSEDSDAESIYDNIFSTKRRNVNPYNVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTTNPDLLLEYDVVLTTYGVLSAAFKSEGENSIYHRVKWYRVVLDEAHHIKSHKSQVAAAAIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVEPWCNWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDPAKYADLSRLARKFLESHTESSDMCCESGAQQNAELNKLASLACTFLQNSDSASHSVQSRGYIDEVLGHIQKGETVECSICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKSDLIALPTESPFKVDIENNLTESSKLSKLFDFLEKIQKYSDEKSIVFSQWTSFFNLLENPLRRRGIGFLRFDGKLTQKQRESVLKEFNNTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRKVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2648 1157 SMART helicmild6 1021 1104 IPR001650 -
Tpr1g2648 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 759 IPR027417 -
Tpr1g2648 1157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 889 983 IPR013083 -
Tpr1g2648 1157 Gene3D - 775 1157 IPR027417 -
Tpr1g2648 1157 ProSiteProfiles Zinc finger RING-type profile. 921 961 IPR001841 -
Tpr1g2648 1157 PANTHER DNA REPAIR PROTEIN RAD5B 423 1156 - -
Tpr1g2648 1157 CDD SF2_C_SNF 977 1115 - -
Tpr1g2648 1157 SMART ultradead3 468 740 IPR014001 -
Tpr1g2648 1157 Pfam SNF2-related domain 475 837 IPR000330 GO:0005524|GO:0140658
Tpr1g2648 1157 Gene3D - 522 760 IPR038718 -
Tpr1g2648 1157 Pfam HIRAN domain 262 347 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr1g2648 1157 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 423 1156 - -
Tpr1g2648 1157 SMART ring_2 921 960 IPR001841 -
Tpr1g2648 1157 Pfam Zinc finger, C3HC4 type (RING finger) 919 966 - -
Tpr1g2648 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 721 IPR014001 -
Tpr1g2648 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 994 1153 IPR001650 -
Tpr1g2648 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 1148 IPR027417 -
Tpr1g2648 1157 Pfam Helicase conserved C-terminal domain 991 1104 IPR001650 -
Tpr1g2648 1157 SUPERFAMILY RING/U-box 917 970 - -
Tpr1g2648 1157 SMART HIRAN_2 256 353 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr1g2648 1157 ProSitePatterns Zinc finger RING-type signature. 936 945 IPR017907 -
Tpr1g2648 1157 CDD DEXDc_SHPRH-like 472 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2648 Tpr-Chr1 30428801 30435089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2648 185 1156 RAD5 or RAD16-like Gene Family AT5G43530 58.248 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g2648 SNF2_N 2.6e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2648 K15505 - gmx:100806677 1453.73