Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2647 ATGGCTCGAAAGAAGCTGAAACTTGCGTATATAACATGTAACTCGAAGAGGAGGGAAACATTCAGAAAGAGGAAATCTGGTCTTATGAAGAAGGTTAATGAACTTAGCACCCTTTGTGGAATAGAAGCTTGTGCCATAATCTATGATCAGAACAATCCTCAAGCAGAGGTTTGGCCATCAGATTCAAGAGTCAAAAGTGTGTTATCGAGATTTGGGAGTTTGTCTGAATTGGAGCGAAACAAAAAGAAGGTGGATCAAGAGGTTTTCTTAAGGGAAAGCATAGAGAAAACATGTGATCAATTGAACAAAAAAAAGGAGGAAAATAAGAAGAAAGAAATGGCCAATATAATTGATCCTTACATTCATAATGGTGAACTTAATAGCAATTTAATGAGCAAATATGATTTCAATGATTGGTCATCTTTTATTGATGAGAATCTAAAGGAAATCGATCGAAAGATGAAAAGAATGCAAATTGAAGCCCAAGATCCTTAG 495 0.3556 MARKKLKLAYITCNSKRRETFRKRKSGLMKKVNELSTLCGIEACAIIYDQNNPQAEVWPSDSRVKSVLSRFGSLSELERNKKKVDQEVFLRESIEKTCDQLNKKKEENKKKEMANIIDPYIHNGELNSNLMSKYDFNDWSSFIDENLKEIDRKMKRMQIEAQDP* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2647 164 PANTHER MADS BOX PROTEIN 2 158 - -
Tpr1g2647 164 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Tpr1g2647 164 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Tpr1g2647 164 Coils Coil 91 114 - -
Tpr1g2647 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Tpr1g2647 164 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr1g2647 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g2647 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g2647 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g2647 164 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Tpr1g2647 164 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 158 - -
Tpr1g2647 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2647 Tpr-Chr1 30423636 30424382 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2647 1 150 Type I MADS-box Gene Family AT3G05860 46.000 4.73e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g2647 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2647 - - cam:101496969 221.476