Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2643 ATGAACAAGGTTAATGAACTTAGCACCCTTTGTGGAATAGAAGCATGTGCGATAATTTATGATCAAAACAATCCTCAAGCAGAGGTTTGGCCATCAGATTCAGGAGTCAAACGTGTGTTGTCGAGGTTTGGGAGTTTGTCTGAATTGGAACGAAGCAAAAAGAAAGTGGATCAAGAGGTCTTCTTAAGGGAAAGCATAGAGAAATCCTGTGATCAATTGAATAAAAAAATGGAGGAAAATAGGAAGAAAGAAATGGCCAATATAATTGATCATTTCATTCATAATGGAGAATTTAATAGTCATTTAATGAGCAAAGATGATCTCAATGTTTTCTCATCTTTTATTGATGAGAATTATCTGAAGGAAATCAATCAAAAGATGAAAGAAATGCAAATTGAAACCCAAGATCCTTAG 414 0.343 MNKVNELSTLCGIEACAIIYDQNNPQAEVWPSDSGVKRVLSRFGSLSELERSKKKVDQEVFLRESIEKSCDQLNKKMEENRKKEMANIIDHFIHNGEFNSHLMSKDDLNVFSSFIDENYLKEINQKMKEMQIETQDP* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2643 137 Coils Coil 63 83 - -
Tpr1g2643 137 Gene3D - 1 68 IPR036879 GO:0003677|GO:0046983
Tpr1g2643 137 PANTHER MADS BOX PROTEIN 2 131 - -
Tpr1g2643 137 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 131 - -
Tpr1g2643 137 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2643 Tpr-Chr1 30365266 30365679 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2643 4 128 Type I MADS-box Gene Family AT5G48670 42.520 4.14e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g2643 SRF-TF 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2643 - - mtr:MTR_3g465410 174.096