Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2642 ATGGAAGTTTCATCCGGAGCAGATGTAGCTGAAAGCATAGCTCAATTTGCAAGAAGGCGACAACGCGGTGTTTGTGTCTTAAGCGGTAGCGGATCAGTAGCAAATGTTACCCTTAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTACATGGAAGATTCGAGATTCTATCGTTAACCGGAGCTTTTCTACCTGGACCTGCTCCTCCAGGCGCTACAGGACTAACAGTATACCTTGCTGGTGGACAAGGTCAAATTGTTGGAGGAAGTGTTGTTGGATCTTTAATTGCTGCTGGACCTGTTATGGTTATTGCTGCTACTTTTGCCAATGCTACTTATGAGAGATTACCACTTGAGGATGAAGAGGATGATGATAACGGCGGCGGTGGTCATGTAGGACATCATGTTGGAGGAGGTGGTAATTCATCTCCTCCTGGAATTGGAAGTAGTGGCGGAGGCGGTGGTGGTGGGGGCCACATGCAATCTGGCCACCTTCCAGATCCATCTTCTTTGCCTTTGTATAATTTGCCACCAAATCTTCTTCCTAATGGTGGTCAGGTGGGACATGAATCATTTCCCTGGCCTCATGGAATTAGGCCACCTTATTGA 609 0.4778 MEVSSGADVAESIAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQIVGGSVVGSLIAAGPVMVIAATFANATYERLPLEDEEDDDNGGGGHVGHHVGGGGNSSPPGIGSSGGGGGGGGHMQSGHLPDPSSLPLYNLPPNLLPNGGQVGHESFPWPHGIRPPY* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2642 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 202 IPR014476 GO:0003680
Tpr1g2642 202 PANTHER DUF296 DOMAIN PROTEIN 1 202 - -
Tpr1g2642 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 109 IPR005175 -
Tpr1g2642 202 Gene3D - 1 124 - -
Tpr1g2642 202 CDD DUF296 2 108 IPR005175 -
Tpr1g2642 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Tpr1g2642 202 ProSiteProfiles PPC domain profile profile. 1 131 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2642 Tpr-Chr1 30348905 30351114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2642 1 202 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 65.854 1.52e-70 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2642 - - gmx:102663643 223.016