Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2641 ATGTATAAATCAAAAGCATTTGGATTCATAATTTTTCTGCTCCTATTATGTGTATCTGCAACTTCTGATGGATTTCCTAAATGCAACTGTGATGATGACACAAGCTGGTGGACTATTGAGAAGATTCTAGAATGTCAGAAAGTCGGCGATTTCCTAATCGCGGTCGCGTATTTTTCAATTCCTGTTGAGCTAATTTATTTCATCAGTTGCTCAAATTTTCCATTCAAATGGGTACTTTTTCAGTTCATAGCTTTTATTGTACTTTGTGGAATGACACATTTGTTCAATAGTTGGACTTATGGACCCCATACTTTTCAAATCATGGTGACACTTACTGTCTTGAAAGTCCTCACTGCTATGGTTTCGTGTGCAACTGCGATAACACTCGTCACTTTGATCCCTTTACTGTTAAAAGTGAAGGTTAGAGAGTTGTTGTTGAAGCGGAAGACGAGGGAGCTTGGTATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGTAAATCGCTCGATAGACATAAGATTTTGTATACGACATTGGTTGAATTGTCGAAAACTTTAGGGTTGCAAAACTGTGCTGTATGGATGCCTAATGTTGAGAAAACCACGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATAGTGATTACAAATCCGGATGTTGTGAGAGTTAAGGCTGATAATGTAGTTAACATAATTGATTCTGACTCGGAGCTTTCTTCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCTGTTGCTGCGATTCGAATGCCAATGCTTCGGGTTTGTGACTTCAAAGGTGGAACGCCGGAGCTAACGCAGGCGTGTTATGCGATACTTGTATTGGTACTTCCTAGTGAGGAGGCTAGATCTTGGAGCAATCAAGAATTGGAGATAATTAAAGTTGTTGCTGATCAGGTGGCCGTTGCTCTTTCTCATGCTGCGATTCTCGAAGAATCGCAACTTATAAAAGAGAAATTGGAGGAGCAAAACCGAGCATTGCAACTGGAGAAAATGAATGCTATGCTGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGCAATGGAATGGGACGGCCAATGCATTCAGTTATGGGTTTGCTCTCAATGATGCAAGATGAGAATTTGAAGAATGAACAGAAACTTATTGTGGATTCAATGGTAAGGACAAGCGGCGTCTTATCAAACTTAATGAACGATGCTATGGACAATTCGGAGAGAGATGGTGGAAGTGGAAGATTTCCTTTGGAGATGAAATCTTTTGGTTTACATAATATGTTAAAAGAAGCAACTTGCATTGCAAAGTGTATGAGTTTATGTAAAGGTTTAGGTTTTAAGGTTGAGGTTGATAAGTCTTTGCCTAACCATGTTATCGGCGACGAAAAGAGGGTTTTTCAAGTGATTTTGCATATGGTTGGGAACCTAATAGACGGTAATCATGGTGGAGGGATTCTCGTGTTTCGAGTGTTTGCGGAATCTGGAAGCCGAGGAAGGACTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTAGCGGTGATGTGCATATTAGATTTGATGTAAGAATAAATAGCAGTGATTCGGAGTTGGAGACCTCAGTTTCTTCAGGCCAACTTGCAGGTAAGATGCGTATGAGTGATCCCACGTTCGAGGAAAGGATGAGCTTCAGCATTTGCAAGAAGATAATCCGGTCAATGCAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCACAAGTCATGACCCTTGCTCTTCGGTTTCAATTACGCCATTCTGTCGCGGTAAGCATACCCGAACCAGGGGAGATTTCAGAGCCGTCAAATTCAAATTCATTGTTCAGAGGTCTGCAAGTTTTGTTGGCCGACAATGACGATGTTAATAGAGCAGTGACACAAAAGTTTCTTCGCAAACTAGGTTGTTCTGTTACATCTGTTTCTTCCGGATTCGAATGTCTTAGTCTTGTTGGACATGCTGGTGCATCTCCCTTTGAAGTTGTGCTTTTGGACCTTCACCTGCCTGATTTAGATGGATTTGAATTTACTGCGAGGATCCGGAAGTTTAAAAGCCGCAACTGGCCTATCGTCATTGCTTTGACAGCAAGCTCTGAAGAAGATTTGTGGGAAAAATGTATGCATATTGGATTTAATGGAGTTATTCGAAAGCCGGTTTTGTTAGAAGGATTCGCAGCCGAACTCCGAAGAATCTTGAAGGGAAATTTGGCCCTATTAGGATCTTCAAGTTATTAA 2310 0.4108 MYKSKAFGFIIFLLLLCVSATSDGFPKCNCDDDTSWWTIEKILECQKVGDFLIAVAYFSIPVELIYFISCSNFPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMVTLTVLKVLTAMVSCATAITLVTLIPLLLKVKVRELLLKRKTRELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTTMNLTHELNGRNVNSSIVITNPDVVRVKADNVVNIIDSDSELSSASSGVSVDAGPVAAIRMPMLRVCDFKGGTPELTQACYAILVLVLPSEEARSWSNQELEIIKVVADQVAVALSHAAILEESQLIKEKLEEQNRALQLEKMNAMLASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKLIVDSMVRTSGVLSNLMNDAMDNSERDGGSGRFPLEMKSFGLHNMLKEATCIAKCMSLCKGLGFKVEVDKSLPNHVIGDEKRVFQVILHMVGNLIDGNHGGGILVFRVFAESGSRGRTEHGYATWRPSSSSGDVHIRFDVRINSSDSELETSVSSGQLAGKMRMSDPTFEERMSFSICKKIIRSMQGNICSVPNARGFPQVMTLALRFQLRHSVAVSIPEPGEISEPSNSNSLFRGLQVLLADNDDVNRAVTQKFLRKLGCSVTSVSSGFECLSLVGHAGASPFEVVLLDLHLPDLDGFEFTARIRKFKSRNWPIVIALTASSEEDLWEKCMHIGFNGVIRKPVLLEGFAAELRRILKGNLALLGSSSY* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2641 769 Coils Coil 334 361 - -
Tpr1g2641 769 Pfam Response regulator receiver domain 639 745 IPR001789 GO:0000160
Tpr1g2641 769 Gene3D - 172 327 IPR029016 -
Tpr1g2641 769 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 758 - -
Tpr1g2641 769 SMART gaf_1 182 338 IPR003018 GO:0005515
Tpr1g2641 769 PIRSF Ethylen_sen_hybr_HK 1 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Tpr1g2641 769 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Tpr1g2641 769 SUPERFAMILY GAF domain-like 185 331 - -
Tpr1g2641 769 ProSiteProfiles Response regulatory domain profile. 638 757 IPR001789 GO:0000160
Tpr1g2641 769 SUPERFAMILY CheY-like 634 758 IPR011006 -
Tpr1g2641 769 Gene3D - 430 554 IPR036890 -
Tpr1g2641 769 PANTHER ETHYLENE RESPONSE SENSOR 2 11 758 - -
Tpr1g2641 769 Pfam GAF domain 182 328 IPR003018 GO:0005515
Tpr1g2641 769 SMART REC_2 637 753 IPR001789 GO:0000160
Tpr1g2641 769 Gene3D - 637 766 - -
Tpr1g2641 769 Gene3D - 328 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2641 Tpr-Chr1 30306830 30324867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2641 18 758 Miscellaneous Gene Families AT3G04580 53.395 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g2641 GAF 2.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2641 K14509 - gmx:100802948 1112.83