Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2640 ATGACAACCCCTTCGAGCGGAGAGATAAAGAGAATATGTGCGCAGTTACAAGAATTTGGCCCAGTTGGTGAATCTAATGTATTCTACTGGTTTCAGAACCAGAAGTCACGGAATAAGGATAAGCACAAGCAAAGACAACCATACAATAAGAAGAGTGCTAGAGTAATAAAAAAATCGGCAATTTCTTATGGTAACGCCGCTTTAATCCCAACTCAAAACGTCACAGAAACACCTCATTCATCTTCATCATCTTCCCATGATCACCAAAATGCACCTCCTAGTGAATTATTGTTACCTAATAACAATGATGAATTTGTTGGTTTGAACCAAAACCAAGTTGATGCTTTTTGTTACAACCCTACTCAAACTGATCTTCAGCTACCTTCGACTATAACTCCATTTTTCTCTGATCAGCCCGCCGCAGCACCTACTCAAACTGATCTTCAGCTGCCTACAACACCATTTTTCTCTGATGAGCTCCTCAATATGAGTCAACCTGCATTTCCTACTCAAACTGATCTTCAGCTTCCTACAACACCATTTTTCTCTGATGAGCTCCTCAATGTGATTCAGCCTGTATTGGCTCCACAAATTGTTGATGTGCCTGATTTGCTAAATGATGAGGACTTTATGAGTTATTTGAATGACCAACATGATCAAGGGAATAATCAAGATGAAGGAGCTTCAATGAATATGTTGCAACAAGAAGAAGAACCACAACTGAATTTTGGGGTTAGTTCAAATATAAGCAATCATGATTCAACTGATCTTGCTCCTCTTCCCCCCATTACTATTGAGGCACCTGTTGTTGATCCATTCCCCATTACTCAATTTCAAGGTAATCAATTACAGTTTGTTTACTAA 864 0.3912 MTTPSSGEIKRICAQLQEFGPVGESNVFYWFQNQKSRNKDKHKQRQPYNKKSARVIKKSAISYGNAALIPTQNVTETPHSSSSSSHDHQNAPPSELLLPNNNDEFVGLNQNQVDAFCYNPTQTDLQLPSTITPFFSDQPAAAPTQTDLQLPTTPFFSDELLNMSQPAFPTQTDLQLPTTPFFSDELLNVIQPVLAPQIVDVPDLLNDEDFMSYLNDQHDQGNNQDEGASMNMLQQEEEPQLNFGVSSNISNHDSTDLAPLPPITIEAPVVDPFPITQFQGNQLQFVY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2640 287 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 280 IPR044557 GO:0003700|GO:0050793
Tpr1g2640 287 MobiDBLite consensus disorder prediction 38 52 - -
Tpr1g2640 287 MobiDBLite consensus disorder prediction 34 53 - -
Tpr1g2640 287 SUPERFAMILY Homeodomain-like 3 46 IPR009057 -
Tpr1g2640 287 Pfam Homeodomain 2 39 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2640 Tpr-Chr1 30280013 30280876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2640 1 49 Wox Gene Family AT2G33880 61.224 5.82e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tpr1g2640 Homeodomain 2.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2640 - - mtr:MTR_7g025010 149.058