Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2628 ATGTTGCAAGATGTTATCCATCCTCCATCACATGATGATCAACTATCCATTGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACCCCGATTTGTTCCACGACTCCTTGCAACAAAATTCCGATGTTACTTCAAGCTCAAATTGTTGTCAAGACGAAAACAACATCAACAACAACAATAATTCCTCGTATACCTTAAACAACATATCACAAGCTTTAGATTTAGAAAATAATAACATCAATAGCAATAATAGCAATAGTAATAGTACCGCTACAACAACGAGCACAACTAGCACTACCAACACGAACAACATTAAGAATAATACCAATAATAACCTCTCAATCATCTTCGATTCTCAAGAAGAAATCGACAATGACATATCAGCTTCCATAGACTTCACATCATCGTCATCTTTTCTGGTTCCGTCCCTTCTTCAGATCAATACAACTCATCAAGAACAATTTGATTTCTCTTCAACACAACCTCTTGAACTATCAACATGTTCTGTTTTGAAAGGGCTATCTTCTCAATATCAAACTGATATTAGTCCTGTTTCAGCACCAGCGCAGCTTATCGGTGGTGCTTCGTTCCCTTCTGTGTTTGAAGATGATTGCATATCTTCAATTCCTTCTTATTCGCCTTCGTGTAATTCTTATCTTAGTAATGGTTTAGGTTTGTATATGCCTCAAGGAAATCTAAATACTGCTTTATCTGCTGATAGTTCTAGCTTATTTGGTGGAGGAATTCTATTAGGTTCTGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGCTGGAATTTATTGTACAGATTCTGTTCAACAAGTTTTTAATCCTCAAGATTTTCAGGCACTTGGTACTGAGAATCACAAACTAGTAGCTGCTGCTGGTTCTGCCAATTTAGCACCAGAAATCTCACACTTGGAGGACTCTAGTTTGAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAGAAGAGAAATGAAAGAAATTTCAGTAAGAAAATCAAGTATGCTTGTCGAAAAACTTTAGCGGATAGCCGTCCGCGAGTTAGAGGAAGGTTCGCAAAAAATGATGATTTTGGAGAGAATCAAAGGCCAGCTAGTAGCAACCATGAAGATGATGATGAAATAGCTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1281 0.3638 MLQDVIHPPSHDDQLSIDEISSPNISAQIFELCDPDLFHDSLQQNSDVTSSSNCCQDENNINNNNNSSYTLNNISQALDLENNNINSNNSNSNSTATTTSTTSTTNTNNIKNNTNNNLSIIFDSQEEIDNDISASIDFTSSSSFLVPSLLQINTTHQEQFDFSSTQPLELSTCSVLKGLSSQYQTDISPVSAPAQLIGGASFPSVFEDDCISSIPSYSPSCNSYLSNGLGLYMPQGNLNTALSADSSSLFGGGILLGSEMQTQDLDYQGENAGIYCTDSVQQVFNPQDFQALGTENHKLVAAAGSANLAPEISHLEDSSLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENQRPASSNHEDDDEIAVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2628 426 PANTHER CCT MOTIF FAMILY PROTEIN 17 426 - -
Tpr1g2628 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 426 - -
Tpr1g2628 426 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Tpr1g2628 426 MobiDBLite consensus disorder prediction 365 390 - -
Tpr1g2628 426 MobiDBLite consensus disorder prediction 86 110 - -
Tpr1g2628 426 MobiDBLite consensus disorder prediction 365 391 - -
Tpr1g2628 426 Pfam CCT motif 330 372 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2628 Tpr-Chr1 30003751 30009186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2628 309 378 C2C2-CO-like Transcription Factor Family AT5G24930 38.571 3.14e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g2628 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2628 - - gmx:100793417 496.508