Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2627 ATGAACTGCTCCATTTCCGGTGAGGTTCCGGAAGAGCCTGTGGTGTCAAAAGGCTCCGGTCTTCTCTTTGAGAAGAGGTTAATCGAGAGACATATTGCGGATTATGGGAAGTGTCCAGTTACTGGAGAACCACTTACTTTGGATGACATTGTACCAATCAAAACAGGCAAGATTGTGAAGCCTAGACCAGTGCAGGCAGCTAGCATTCCTGGCATGATCGGGATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAATTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGTGTGATTGCAAGACTTAAAAAGGAACGAGACGAAGCTAGGTCTATACTTGCACAGGCAGAAAGGCAGTTCCCGATTTCTACACCAAATGATGCGACTGCAAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGATGAGGAGCTAGCACCTAATGCGAAGAAATTACATCCTGGAATTTCTTCTAGCATAATTACTGAGCTAACAAACTGTAATGTTGCTCTTTCACAGCAGAGGAAAAAGCGACAGATTTCTGCGACTTTGGCCCCTATTGATGCTATAGAGACATATACCCAGATATCTAGTCATCCCTTAAACAAAACAAACAGACAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGACTTGATTGCAACTGGAAATGTTGATACAAATGCTGTTATTTTTGACCGTCCATCAGGGCAAGTATTAGCTACACTCAGCGGTCACTCTAAAAAGGTAACCAGCGTGAAGTTTGTAGGTCAGGGCGAATCTATCATTACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGATGATGGTCGCTATACCTGCAGACAGACCTTGAAAGATCATTCGGCTGAGGTGCAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACCCAGGTTTCGGACTCTTCCGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACTGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTTAAAAGTCAGGCAAATGTTGCTAAATTTGATGGACACCAGGGGCATGTGACTGCAATATCCTTTTCTGAGAATGGTTACTACCTTGCGACTGCAGCTCATGACGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGAATTTTGCCCCATATGACAAAGAAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGGAGGCTCGGATGTAAGGATATACCAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTTTTCCCGATTTATCTGGAACAGGGAAATCCACATGTGTAAAATTTGGCCCAGATTCAAAATACTTAGCAGTTGCATCAATGGACCGGAATCTTAGAATATTCGGCCAACCTGGTGAAGATATACCTGCCGCAAGTTGTGCTCCATAG 1578 0.4354 MNCSISGEVPEEPVVSKGSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMIGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPISTPNDATANAPVHSNGKRAADDEELAPNAKKLHPGISSSIITELTNCNVALSQQRKKRQISATLAPIDAIETYTQISSHPLNKTNRQGIISLDILYSKDLIATGNVDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGRYTCRQTLKDHSAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHQGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDKETPTNSVEFDHSGSYLAVGGSDVRIYQVANVKSEWNLIKTFPDLSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDIPAASCAP* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2627 525 Gene3D - 202 513 IPR015943 GO:0005515
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Tpr1g2627 525 SUPERFAMILY WD40 repeat-like 222 511 IPR036322 GO:0005515
Tpr1g2627 525 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Tpr1g2627 525 Pfam WD domain, G-beta repeat 483 511 IPR001680 GO:0005515
Tpr1g2627 525 Pfam WD domain, G-beta repeat 357 381 IPR001680 GO:0005515
Tpr1g2627 525 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Tpr1g2627 525 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Tpr1g2627 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Tpr1g2627 525 SUPERFAMILY RING/U-box 1 53 - -
Tpr1g2627 525 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Tpr1g2627 525 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Tpr1g2627 525 Coils Coil 115 135 - -
Tpr1g2627 525 MobiDBLite consensus disorder prediction 132 161 - -
Tpr1g2627 525 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 518 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Tpr1g2627 525 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Tpr1g2627 525 SMART WD40_4 212 252 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 384 422 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 425 464 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 255 294 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 342 381 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 300 339 IPR001680 GO:0005515
Tpr1g2627 525 SMART WD40_4 471 512 IPR001680 GO:0005515
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Tpr1g2627 525 CDD WD40 224 511 - -
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Tpr1g2627 525 CDD RING-Ubox_PRP19 3 54 - -
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Tpr1g2627 525 MobiDBLite consensus disorder prediction 133 149 - -
Tpr1g2627 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2627 Tpr-Chr1 29986158 29994492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2627 1 517 U-box Gene Family AT1G04510 74.231 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2627 K10599 - gmx:100527039 945.651