Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2625 ATGGCAACTCAAATGAGCAAAAAGCGAAAGTTCGTCGCAGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTGACAAGAGAGCTTGCTGAGGATGGTTATTCAGGTGTTGAAGTTAGGGTTACACCGATGCGCACTGAAATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAACTTACCTCAGTGGTACAGAAGAGGTTTAAGTTCCCCGAGAACAGTGTTGAACTTTATGCTGAGAAGGTTAACAACAGAGGACTTTGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTTGGTGGTCTTGCCGTCCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGGGCCAAGGGTTGTGAGGTTATTGTCAGTGGAAAATTAAGAGCCCAGAGAGCCAAATCCATGAAATTCAAGGATGGTTACATGATTTCTTCTGGACAACCAGTCAAGGACTACATTGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATTAAAGTTAAGATCATGCTTGATTGGGATCCTAAAGGTAAACAAGGTCCTAAAACTCCTCTCCCTGATATTGTCACCATTCACACTCCAAAGGAGGAGGAAGAGTACATCCAGTCTGCTGCTGCCGTGTCAAATGATATTGAGGTTTCAGCTGCAGTCCCTGTTGTTTGA 720 0.4528 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIQSAAAVSNDIEVSAAVPVV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2625 239 CDD 40S_S3_KH 15 95 - -
Tpr1g2625 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Tpr1g2625 239 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 233 - -
Tpr1g2625 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 233 - -
Tpr1g2625 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Tpr1g2625 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Tpr1g2625 239 Gene3D - 1 91 IPR015946 -
Tpr1g2625 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Tpr1g2625 239 Gene3D - 93 233 IPR036419 -
Tpr1g2625 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Tpr1g2625 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Tpr1g2625 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2625 Tpr-Chr1 29955240 29957619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2625 1 228 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.035 8.05e-153 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2625 K02985 - gmx:100808705 441.039